The largest database of trusted experimental protocols

Glow discharged carbon coated grids

Manufactured by Agar Scientific
Sourced in United Kingdom

Glow-discharged carbon-coated grids are a type of laboratory equipment used in electron microscopy. They provide a uniform, conductive surface for the sample to be placed on, enhancing the quality of the images obtained during the microscopy process.

Automatically generated - may contain errors

5 protocols using glow discharged carbon coated grids

1

Negative Staining for Electron Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
For negative staining, 5 μl of each sample were applied onto glow-discharged carbon-coated grids (Agar Scientific, Stansted, UK) and incubated for 1 min. The grids were washed with 5 μl of deionized water before incubating for 30 sec in 1% (w/v) of Uranyl Acetate (Agar Scientific, Stansted, UK). CCD images were collected using a Tecnai Spirit operated at 120 Kv and a 2Kx2K CCD camera.
+ Open protocol
+ Expand
2

Negative Staining of Baseplate Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
For negative staining, 6 μL of each successfully expressed baseplate complex was applied onto glow-discharged carbon-coated grids (Agar Scientific, Stansted, UK) at a concentration of 0.03 mg/mL. The grids were washed three times with 10 μL of deionized water before incubating for 45 s in 1% (w/v) uranyl formate (Agar Scientific, Stansted, UK). CCD images were collected using a Tecnai Spirit operated at 120 KV and a 2 K × 2 K CCD camera.
+ Open protocol
+ Expand
3

Structural Analysis of Protein Complex

Check if the same lab product or an alternative is used in the 5 most similar protocols
3 μl of the purified complex diluted to 0.04 mg/ml was applied to glow-discharged carbon-coated grids (Agar Scientific). Triton X-100 was added at a final concentration of 0.1 % in order to increase the number of side views. The sample was negatively stained with 2 % uranyl acetate and visualized in a FEI Tecnai F20 FEG microscope operating at a voltage of 200 kV under low dose conditions (~25 e/Å2). Images were recorded as described above at a magnification of 68,200 (2.2 Å/pixel) and a defocus range of 0.8-2.0 μm. Images were corrected for the CTF effect as described above and 1981 particles selected manually using BOXER. Images were normalised, band-pass filtered and centered using EMAN. They were then subjected to a reference-free classification using EMAN. The images corresponding to end and side views were extracted into two separate subsets containing 638 and 368 single particle images, respectively. End views were further aligned and classified using MLalign2D (XMIPP)30 . The final classes were checked for symmetry by calculating their rotational auto-correlation function as described previously7 (link). A plot of the rotational auto-correlation function revealed 14 peaks reflecting the C14 symmetry of the core complex (Extended Data Fig. 2d).
+ Open protocol
+ Expand
4

Structural Analysis of VirB4/TrwK Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
3 μl of the purified VirB4/TrwK or MBP-VirB4/TrwK fusion protein diluted to 0.01 mg/ml were applied to glow-discharged carbon-coated grids (Agar Scientific). The sample was negatively stained with 2 % uranyl acetate and observed in a FEI Tecnai F20 FEG microscope operating at a voltage of 200 kV. Images were recorded on a Gatan CCD camera (as for the T4SS3-10 complex) under low dose conditions (~10 e/Å2) at a magnification of 104,167 (1.44 Å/pixel) and a defocus range of 1-2.5 μm. Images were CTF-corrected as described above, and 3100 (VirB4/TrwK) or 4569 (MBP-VirB4/TrwK) particles were selected manually using BOXER. Images were normalised, band pass filtered and centred, subjected to a reference-free classification using EMAN, and then classified using MLalign2D (XMIPP) and/or MRA with MSA (IMAGIC).
+ Open protocol
+ Expand
5

Viral Morphology Analysis via Negative Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
For negative staining, 5 μl of each sample were applied onto glow-discharged carbon-coated grids (Agar Scientific, Stansted, UK) and incubated for 1 min. The grids were washed with 5 μl of deionized water before incubating for 30 sec in 1% (w/v) of uranyl acetate (Agar Scientific, Stansted, UK.). CCD images were collected using a Tecnai Spirit operated at 120 Kv and a 2 K × 2 K CCD camera. The tail length measurements were obtained by averaging the single tail lengths from ensembles of 10 to 18 single mutated virions images at the same scale.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!