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10 protocols using penicillin streptomicin

1

Colon Cancer Cell Line Differentiation

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The colon carcinoma HT29 (ATCC® HTB-38™) and Caco2 (ATCC® HTB-37™) cell lines were both purchased from American Type Culture Collection. HT29 cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Thermo Fisher Scientific, Massachusetts, USA) supplemented with 10% fetal bovine serum (FBS, Thermo Fisher Scientific, Massachusetts, USA) and 1% Penicillin-Streptomycin (Thermo Fisher Scientific, Massachusetts, USA). Caco2 cells were maintained in Minimum Essential Medium Eagle (MEM, Sigma-Aldrich, Missouri, USA) supplemented with 20% FBS, 1% Penicillin-Streptomicin and L-Glutamine. HT29 and Caco2 differentiation was achieved by spontaneous post-confluence growth arrest. Briefly, 5x104 cells per well were seeded in a 6 multi-well plate. Cells were harvested at day 3 (pre-confluence), day 7 (confluence), day 14 (post-confluence) after seeding and processed for RNA extraction. Each single experiment was conducted in triplicate. Results are expressed as mean of 3 independent experiments.
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2

Evaluating Anticancer Effects of MG Extract

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Jurkat cells (acute T-cell lymphoblastic leukaemia) and HL-60 cells (acute promyelocytic leukaemia) were purchased at the “Istituto Zooprofilattico” of Lombardia and Emilia-Romagna (Brescia, Italy). Both cell lines were cultured at 37 °C and 5% CO2 in Roswell Park Memorial Institute (RPMI)1640 medium supplemented with 1% Penicillin-Streptomicin (PS), 1% L-Glutamine (L-GLU) and 10% of Fetal Bovine Serum (FBS) for Jurkat cells and 20% of FBS for HL-60 cells (all from Sigma Aldrich, Saint Luis, MO, USA).
The MG extract was dissolved in RPMI at 20% of DMSO (v/v), in order to obtain a Working Solution 50 mg/mL. The solution thus prepared has been stored for a maximum of 72 h at − 20 °C and protected from light. The concentrations of the different extracts tested ranged from 0 to 750 μg/mL and the concentration of DMSO was always within the 0.05–1% range in all experimental conditions.
In particular, 3.75 × 105 of Jurkat cells were treated with increasing concentrations of extract from 0 to 500 μg/mL and incubated for 24, 48 and 72 h. The cell density never exceeded the critical value of 3.00 × 106 cells/mL of medium. One hundred twenty-five thousand of HL-60 cells were treated with increasing concentrations of extracts from 0 to 750 μg/mL and incubated for 24, 48 and 72 h. The cell density never exceeded the critical value of 1.00 × 106 cells/mL of medium.
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3

Culturing T. cruzi Strains in Vero Cells

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The NRK and Vero cell lines were routinely maintained in DMEM (Gibco) supplemented with 10% SFB (Natocor) and Penicillin/Streptomicin (100 Units/0.1mg/mL, Sigma) at 37 °C and 5% CO2 atmosphere. The trypomatigotes of T. cruzi strains CL Brener, Y, and RA were routinely maintained in Vero cells cultured in DMEM supplemented with 4% SFB and Penicillin/Streptomicin. The trypomastigotes of each strain were purified from infected Vero cells supernatants and used in the different assays.
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4

Purification and Culture of Primary Human Granulosa Cells

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hGCs were purified by centrifugation through a discontinuos Percoll (Amersham, Sweden) gradient as indicated in [22 (link)], and cultured individually in 24 wells plate (50 x 103 cells/well) in McCoy 5A medium (Carlo Erba, Italy) supplemented with 5 % foetal bovine serum (FBS) South America (EU Approved, Carlo Erba, Italy), 2mM L-Glutamine, 1 % Penicillin/Streptomicin and 1 % Amphotericin B (Sigma Aldrich, St. Louis, MO, USA). Primary hGCs culture were mantained at 37 °C under a controlled atmosphere of 5 % CO2 for 6 days to avoid side effect due to IVF hormones treatment, and subjected to medium changes with fresh culture medium daily.
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5

A549 Cell Culture Conditions

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The A549 human lung
carcinoma cell line
was obtained from the American Type Culture Collection (ATCC), cultured
in DMEM supplemented with 10% fetal bovine serum (FBS, Gibco), 1%
penicillin/streptomicin (Sigma), and 0.1% amphotericin B (Gibco) and
maintained in 20% O2 and 5% CO2 at 37 °C
under normoxic conditions or in 1.5% O2 and 5% CO2 at 37 °C under hypoxic conditions. Cells were routinely tested
for mycoplasma using a universal mycoplasma detection kit (ATCC).
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6

PBMC Isolation and Stimulation for Transplant

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Post-transplant PBMCs were isolated using BD Vacutainer CPT ficoll tubes (BD Biosciences, CA, United States), frozen in FCS containing 10% DMSO, and stored in liquid nitrogen. For stimulation experiments, 3-4 × 105 cells were cultured in RPMI 1640 medium supplemented with 10% heat-inactivated fetal bovine serum (Biochrom AG, Berlin, Germany), penicillin/Streptomicin (100 U penicillin/mL, 100 μg streptomycin/mL), 1 mmol/L Na-Piruvate (Sigma Aldrich, MI, EEUU) and L-Glutamine (2 mmol/L, Irvine Scientific, Wicklow, Ireland) in the presence of 8 pools, each one containing 5 peptides and the last one containing only 4 (10 μg/mL each peptide). Next, 10 μg/mL anti-CD28/CD49d (BD Biosciences, CA, United States) was added for 48 h at 37 °C 5% CO2, and 10 μg/mL Brefeldin A was added to the samples during the last four hours (Golgi Plug: BD Biosciences). A negative control (without peptide but with the proportional amount of DMSO) and a positive activation control with 10 ng/mL PMA + 1 μg/mL ionomycin (Sigma Aldrich) were included in each assay. Pre-transplant samples were not available.
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7

Senescent and Damaged VSMC Cultures

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Human coronary smooth muscle cells from a young healthy donor were purchased from Promocell (C-12511) and cultured in growth medium (Promocell, C-22062), supplemented with 10% FBS and 1% penicillin-streptomicin (Sigma Aldrich). To achieve RS, cells were serially passaged (Bielak-Zmijewska et al., 2014 (link)). Cells were cultured until 70–80% confluence and re-seeded in T75 Flasks (Thermo Fisher Scientific, Nunc EasYFlask, #156499) at a density of 3.5 × 103 cells/cm2 until proliferative arrest (passage 6–8). Cumulative population doublings were counted using the formula cPD = X + 3.322(log Y−log I), X representing the cumulative population doubling of the subculture used to initiate the culture, Y being the viable cell number on harvest, and I the cell number on inoculation. Low passage VSMCs (passage 2–3) were treated with bleomycin to induce DS, as previously reported (Gardner et al., 2015 (link)).
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8

Subretinal Electroporation of Mouse Embryos

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Mice were killed with CO2, and E13.5 embryos were isolated and kept in cold PBS. Embryos were decapitated and DNA was injected subretinally using an elongated borosilicate glass capillary (Harvard Apparatus). All constructs were co-electroporated with GFP subcloned in the same vector. The success of DNA injection was assessed using 0.03% Fast Green added to the DNA solution. The paddles of the electrode (CUY650P5, Sonidel) were placed at the bottom and at the top of the head, respectively64 . Two poring pulses (square wave, 175 V, 5 ms duration, with 50 ms interval) followed by four transfer pulses (40 V, 50 ms and 950 ms interpulse) were applied. The protocol was repeated with inverted polarities. After electroporation, the retinas were isolated using a 21G needle and kept 24 h in culture medium (DMEM-F12 supplemented with 1mM glutamine (Sigma Aldrich), 1% penicillin/streptomicin (Sigma Aldrich), 0.01% BSA (Sigma Aldrich), 0.07% glucose), in a humidified incubator at 37 °C and 5% CO2. Non-electroporated retinas were isolated at E14.5. Retinas were cut into 200 μm squares and explants were plated on glass coverslips coated with 100 μg ml1 poly-L-lysine (Sigma Aldrich) overnight at 37 °C and 20 μg ml1 Laminin (Sigma Aldrich) for 3 h at 37 °C. Cells were cultured for 24 h in culture medium supplemented with 0.4% methyl cellulose and B27.
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9

Adipose Tissue Secretome Isolation

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Adipose tissue samples (n = 78: 26 SAT, 26 VAT and 26 BAT) were processed as previously described with some modifications to obtain tissue secretomes [9 (link),66 (link)]. In brief, whole adipose tissue explants were processed to remove any contaminants by doing an intensive wash in PBS that was repeated several times. The tissue pieces were transferred to a tube containing 25 mL of PBS and centrifuged for 5 min, at 1800 rpm, at room temperature to eliminate red blood cells and debris. 1 g pieces of each tissue type (VAT, SAT, and BAT) from independent animals were incubated at 37 °C and 5% CO2 in 5 mL/tissue piece/well with serum-free DMEM medium without phenol red (Sigma-Aldrich, Burlington, MA, USA) supplemented with 1% (v/v) penicillin-streptomicin. The medium was changed after 2 and 24 h. After the last wash (time point 24 h), all dishes received fresh DMEM medium (3 mL/1 g tissue) and were left in culture for an additional 48 h to allow the secretion of vesicles. Then, the media were collected, centrifuged during 5 min at 1800 rpms, and stored at −80 °C for further analysis.
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10

Cell Line Culture and Characterization Protocol

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The FaDu cell line and its variants were maintained in Dulbecco's Modified Eagle Medium (DMEM) with high glucose (4.5 g/L, Sigma), supplemented with 8.85% (v/v) of fetal bovine serum (Sigma), 1.77 mM L-glutamine (PAA), 0.885% (v/v) MEM non-essential amino acid solution (PAA), 0.885% (v/v) penicillin-streptomicin (PAA), and 8.85 mM HEPES (Sigma). The 293T cell line used for the production of lentiviral vectors was cultured in DMEM with high glucose (4.5 g/L) medium (Sigma) supplemented with 8.85% (v/v) fetal bovine serum (Sigma) and 20 mg gentamicin (Kirka). Cell lines were cultivated in a humidified 5% CO2 atmosphere at 37°C. The mycoplasma detection tests (Minerva) were performed routinely during cell line culturing. All cells used in the experiments were the same ones used in the 15th splitting.
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