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3 protocols using antifade 4 6 diamidino 2 phenylindole dapi mounting solution

1

Immunofluorescence Assay for HEV Infection

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HepG2 cells (4×104) were seeded onto eight-well Lab-Tek II CC2 slides (Nunc) one day before infection. IFA for detection of HEV-infected cells was performed as described [62 (link)]. To examine the subcellular localization of MAVS and IRF3, cells were fixed with 4% paraformaldehyde for 20 minutes and permeabilized with 0.2% Triton X-100 for 15 minutes. Cells were stained with pre-absorbed ch1313 serum and a rabbit anti-MAVS, mouse anti-PMP70, or rabbit anti-IRF3 for 1 h, and subsequently incubated with Alexa Fluor 488/594-conjugated goat-anti-rabbit IgG, Alexa Fluor 488/594-conjugated goat-anti-mouse IgG, or Alexa Fluor 488-conjugated goat-anti-human IgG (Invitrogen) for 1 h. After adding antifade-4 6-diamidino-2-phenylindole (DAPI) mounting solution (Sigma), slides were viewed with a Zeiss LSM 510 confocal microscope with a 63x (NA1.2) apochromatic water objective. Images were acquired using the ZEN 2009 software.
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2

SARS-CoV-2 Infection Assay in Calu-3 Cells

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The siRNA transfection was conducted in 384-well plate format. 6,000 Calu-3 cells were plated and transfected with siRNA SMARTpools (Dharmacon) using RNAiMAX (Invitrogen). 48 h post-transfection, cells were infected with SARS-CoV-2 at MOI of 0.125 per well. 48 h post-infection, infected cells were fixed with 5% paraformaldehyde (PFA) for 4 h and permeabilized with 0.4% Triton X-100 for 15 min. After blocking with blocking buffer containing 3% bovine serum albumin (BSA) and 10% goat serum for 30 min, cells were incubated for overnight at 4°C with rabbit-anti-SARS-CoV-2 NP polyclonal antibodies. After three washes with phosphate-buffered saline (PBS), the cells were incubated with Alexa Fluor 488-conjugated goat-anti-rabbit IgG (Thermo Fisher Scientific, USA) for 1 h at room temperature. After three additional washes, antifade-4 6-diamidino-2-phenylindole (DAPI) mounting solution (Sigma) was added to the cells for 30 min before imaging. The fluorescence intensity of cells was scanned and the SARS-CoV-2 NP-positive cells were automatically calculated by Celigo imaging cytometry system (Nexcelom, Lawrence, MA, USA) or using the IC200 imaging system (Vala Sciences, CA, USA).
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3

Visualizing Tetherin Localization during Viral Infection

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Localization experiments were performed using IFAs and laser scanning confocal microscopy. Briefly, MDCK cells grown on glass coverslips were transiently transfected with the appropriate tetherin expression constructs by employing Lipofectamine® 3000. At 24 h after transfection, the cells were infected with CIV H3N2 at an MOI of 0.1, as described previously. At 48 h after infection, the cells were fixed with 4% paraformaldehyde-PBS. The cells were incubated with an anti-hemagglutinin (HA) antibody (Sigma, Saint Louis, MO, USA) to detect the HA protein and with anti-FLAG antibody (Sigma, Saint Louis, MO, USA) to detect canine tetherin and then they were stained using secondary antibodies conjugated with fluorescein isothiocyanate (FITC) and cyanine-3 (Cy3). After mounting on slides using antifade 4′,6-diamidino-2-phenylindole (DAPI) mounting solution (Sigma), the cells were visualized with a Leica DM-IRE2 confocal microscope.
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