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9 protocols using tris buffered saline tween

1

Western Blot Analysis of Apoptosis Markers

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OGCs in different groups were collected and lysed in radioimmunoprecipitation assay (RIPA) buffer (Solarbio) containing 1 mM phenylmethanesulfonyl fluoride (PMSF) (Solarbio) at 4 °C for 30 min. The protein concentration was determined with a BCA Protein Assay Kit. Up to 50 µg of protein was electrophoresed on 12% SDS-polyacrylamide gels and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore), which were blocked with 5% nonfat dry milk (BD Biosciences) for 1 h at room temperature. The membranes were then blotted with primary antibodies at 4 °C overnight. The following primary antibodies were used: β-actin (1:1,000, Proteintech, Rosemont, IL, USA), B cell lymphoma 2 protein (Bcl-2, 1:1,000, Cell Signaling Technology), Bcl-2-associated X protein (Bax, 1:2,000, Abcam), caspase-3 (1:1000, Cell Signaling Technology), cleaved caspase-3 (1:1,000, Cell Signaling Technology) and cleaved poly-ADP-ribose polymerase (cleaved PARP, 1:250, Abcam). Then, the PVDF membrane was washed 3 times with Tris-buffered saline/Tween (Solarbio) and incubated with HRP-conjugated secondary antibody (1:10,000, ZSGB-BIO) for 70 min at room temperature. Detection was performed using Luminata western HRP substrate (Millipore). The results were obtained with a LI-COR 3600 instrument (LI-COR Biosciences, Lincoln, NE, USA) and analysed with an Image Studio Digits Version 4.0 system; n = 5.
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2

Western Blot Analysis of Protein Expression

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The protein content was extracted using the RIPA lysis buffer containing protease
inhibitors (Roche, CA, USA), separated through 10% sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and then transferred onto
polyvinylidene fluoride membranes, followed by membrane blockade using 5% skim
milk for 1 h at 4°C and incubation with the following primary antibodies (all
from Abcam): MTA1 (ab71153, at a dilution ratio of 1: 1000), HuR (ab200342, at a
dilution ratio of 1: 1000) and β-actin (ab8227, at a dilution ratio of 1: 1000)
at 4°C overnight. Next, after 3 rinses with tris-buffered saline-tween
(Solarbio) to discard blots, the membranes were cultured with the horseradish
peroxidase-labelled goat anti-rabbit IgG (at a dilution ratio of 1: 2000,
ab6721, Abcam) for 2 h. The gray value was analyzed using the NIH Image J
software (National Institutes of Health, Bethesda, MD, USA).
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3

Subcellular Localization of NobZIP77 and NoDGAT2B

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Localization of NobZIP77:GFP and NoDGAT2B:GFP fusion proteins in N. oceanica IMET1 cells was carried out with a laser-scanning confocal microscope, FluoView FV1000 (Olympus, Japan). Chlorophyll autofluorescence was excited at 559 nm and detected at a bandwidth of 650–750 nm. Fluorescence of GFP was excited at 488 nm and detected at a bandwidth of 500–525 nm.
To validate the nucleus-localization of NobZIP77, the NobZIP77:GFP line and WT were stained with 0.5 μg/mL 4′,6-diamidino-2-phenylindole (DAPI, Solarbio) for 5 min at room temperature and then twice-washed with Tris-buffered saline Tween (TBST, Solarbio) for 4 min at room temperature. Fluorescence of DAPI was excited at 405 nm and detected at 450–464 nm.
To confirm the subcellular localization of NoDGATA2B, the NoDGAT2B:GFP line and N. oceanica WT were stained with 0.25 mg/mL Nile red (Solarbio) for 30 min at room temperature and then twice-washed with distilled water. Fluorescence of Nile red was excited at 488 nm and detected at 560–590 nm.
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4

Investigating Nrf2 Inhibition and Oxidative Stress

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DHA and Brusatol (Nrf2 inhibitor) were purchased from Tauto. GSH assay kits and antibodies against β‐actin were purchased from Beyotime. The hydroxyproline kit was purchased from the Jiancheng Bioengineering Institute. The TNF‐α and TGF‐β ELISA kits were purchased from Elabscience. Antibodies against HO‐1 were purchased from Abcam. Antibodies against tumor necrosis factor α (TNF‐α), transforming growth factor‐β (TGF‐β), GPX4, Nrf2, electron microscope fixative, hydrogen peroxide (H2O2), hematoxylin, eosin, osmium acid, lead citrate, uranium acetate and the immunohistochemistry (IHC) special goat anti‐rabbit secondary antibody were purchased from Servicebio. The goat anti‐rabbit IgG (H + L) fluorescent secondary antibody was purchased from Cell Signaling Technology; excitation is 777 nm and peak fluorescence emission is 794 nm. The diaminobenzidine (DAB), sodium dodecyl sulfate (SDS), radioimmunoprecipitation assay (RIPA) buffer and Tris Buffered Saline Tween (TBST) were purchased from Solarbio. The polyvinylidene fluoride membrane was purchased from Millipore. The acetone and ethanol were purchased from Chron Chemicals.
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5

Protein expression and apoptosis analysis

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The expression of E1A protein, Hexon protein, and apoptosis-related proteins (p53, Bcl-2, Bax, cleaved caspase-3, and caspase-3) were detected by Western blot analysis. The total proteins were extracted using RIPA with phenylmethanesulfonyl fluoride (PMSF) (Beyotime Biotechnology, Jiangsu, China), and quantized using a BCA Protein Assay Kit (Beyotime). Sodium dodecyl sulfatepolyacrylamide gel electrophoresis (SDS-PAGE) was carried out to separate the total protein. The separated protein was transferred to a PVDF membrane (Millipore, Bioprocess Technology Center, Billerica, MA, USA), blocked with skimmed milk powder, and incubated in the first antibodies overnight at 4 °C. The membranes were incubated in horseradish peroxidase -conjugated secondary antibodies for 2 h. After extensive washing with 20 ml Tris-buffered saline-Tween (TBST; Solarbio), the proteinwas visualized at Fast Chemiluminescence Image System (ImageQuant 350, GE Healthcare Life Sciences, UAS). The housekeeping genes β-actin was viewed as internal reference.
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6

Protein Extraction and Western Blot Analysis

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As previously described [14 (link)], total protein from each sample was extracted with RIPA lysis buffer (Sigma, St, Lousis) containing 1 mmol/L phenylmethylsulfonyl fluoride (PMSF, Solarbio). A phosphorylase inhibitor and a protease inhibitor cocktail (1:100, Solarbio) were added to prevent degrading of proteins in the extracts. tThe protein concentration was quantified using a BCA Protein Assay Kit (Beyotime, China). Afterwards, the equal boiled protein samples (30 μg) were loaded on 8 ~ 12% sodium dodecyl sulfatepolyacrylamide gels (Solarbio Life Sciences), electrophoretically separated, and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, Massachusetts), which had been wetted in 100% methanol for 15 s previously.. Then the membranes were blocked in 5% skim milk containing Tris-buffered Saline Tween (TBST, Solarbio, China) at room temperature for 1 h to reduce nonspecific bindings. Subsequently, the membranes were incubated with the primary antibodies (1:500 ~ 1:1000 dilutions, Cell Signaling Technology, USA) overnight at 4 °C with gentle agitation. Getting washed 2 ~ 3 times with TBST, the secondary antibodies (1:2000 dilution) were added for incubation for 1 h. Finally, the immunoreactive bands were detected with Chemiluminescent HRP Substrate (Merck Millipore) and quantified through a Image Lab software (Bio-Rad, Hercules, USA) .
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7

Western Blot Analysis of Signaling Pathways

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After washing twice with ice-cold phosphate-buffered saline (PBS), total protein was extracted from treated cells with a mixture of RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China), benzenesulfonyl fluoride (PMSF) (Beyotime Biotechnology), and a protein phosphatase inhibitor (Sigma). The protein concentration was determined via the BCA method after centrifugation at 12,000 rpm for 10 min. Protein was separated on a 10% SDS polyacrylamide gel, transferred to nitrocellulose membranes, and blocked in a blocking solution at room temperature for 1 h. The primary antibodies used were as follows: anti-HIF-1α (#36169), anti-Akt (#2920), anti-p-Akt (Ser473) (#4060), anti-mTOR (#2983), anti-p-mTOR (Ser2448) (#5536), and anti-β-actin (#4970S). All the primary antibodies were obtained from Cell Signaling Technology (Beverly, MA, USA). After incubation with primary antibodies at 4°C overnight, the membranes were washed three times with Tris-buffered saline-Tween (TBST) (Solarbio Biotechnology) and then incubated with a horseradish peroxidase-conjugated secondary antibody (Zhongshan Golden Bridge Biotech; dilution 1 : 5,000) for 1 h at room temperature. Protein bands were visualized with an enhanced chemiluminescence kit (Thermo Fisher Scientific, Suwanee, GA, USA). The band intensity of target proteins was normalized to that of β-actin.
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8

PBMC protein extraction and Western blot

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Total proteins were extracted from PBMCs using RIPA lysis buffer (Solarbio, China), and protein concentration was determined using the Pierce™ BCA Protein Assay Kit (Thermo Scientific, USA). An equal amount of protein was loaded onto 10% SDS-PAGE and subjected to electrophoresis, then transferred onto a polyvinylidene fluoride (PVDF) membrane (Bio-Rad, USA). The membrane was washed with Tris-buffered saline-Tween (TBST) (Solarbio, China), and blocked with 5% skim milk powder or bovine serum albumin (BSA) (Sigma-Aldrich, Germany). Incubation was carried out using specific primary antibodies against STAT3 (Abcam, U.K), pSTAT3 Y705 (Abcam, U.K), ADAM17 (R&D Systems, USA), IL-23 R (Abcam, U.K), and GAPDH (Santa Cruz, USA), followed by the incubation with the secondary antibodies HRP Goat anti-Mouse antibody (abclonal, USA) or HRP Goat Anti-Rabbit IgG (abclonal, USA). Pierce™ ECL Western Blotting Substrate (Thermo Fisher, USA) was used as the chemiluminescent substrate, and X-ray imaging was used to image the bands. Relative expression levels of proteins were quantified by densitometric values of fluorogram bands which was analyzed by Image J software (NIH, USA) and each value was normalized to those corresponding control protein band.
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9

Western Blot Analysis of Protein Expression

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These cells were lysed using RIPA buffer (Solarbio, China) for 30 min on ice, and then centrifuged at 4°C at 1 2000 rpm for 10 min to collect total protein. The extracted protein was quantified through the Pierce™ BCA Protein Assay Kit (ThermoScientific, USA). The protein was separated using a 12% SDS-polyacrylamide gels electrophoresis (SDS-PAGE), and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, USA). The PVDF membrane containing protein was blocked using 5% skim milk at a room temperature for 2 h. Next, STAT3, pSTAT3 Y705, NF-κB p65, ERK, pERK, and GAPDH (antibodies were purchased from Abcam, UK) specific primary antibodies were added and incubated overnight at 4°C. After incubating with primary antibodies, the PVDF membrane was washed using Tris-buffered saline-Tween (TBST, Solarbio, China), and incubated at room temperature with horseradish peroxidase (HRP)-conjugated secondary antibody (goat anti-rabbit or anti-mouse IgG, Santa Cruz, USA) for 1 h. The immunoreactive bands were visualized using enhanced chemiluminescence kit (Millipore, USA), and protein bands were quantitatively analyzed through the Image J software (NIH, USA).
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