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24 protocols using sodium taurodeoxycholate

1

Small RNA Profiling of C. parvum Sporozoites

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C. parvum IOWA oocysts were obtained from Bunch Grass Farm (BGF) (Deary, ID). A total of 108 oocysts were incubated in household bleach (diluted 1 : 4 in water) on ice for 10 min and then washed twice with cold phosphate-buffered saline (PBS). Excystation of sporozoites was induced by incubating oocysts in 0.8 % sodium taurodeoxycholate (Sigma) in PBS at 37 °C for 1 h. Small RNAs (<200 nt) were purified from excysted sporozoites according to the manufacturer’s protocols using the Nucleospin miRNA kit (Macherey-Nagel). The NEXTFLEX Small RNA-seq kit v3 was used to prepare a stranded small RNA library and the library was sequenced on the Illumina NextSeq 500 platform with 75 bp single-end reads (SE75). Library preparation and sequencing were conducted at the Georgia Genomics and Bioinformatics Core (GGBC, Athens, GA, USA).
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2

Synthesis and Characterization of H2bdtc

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BZN, a product manufactured by Lafepe, Brazil, was used as a reference drug. The synthesis of H2bdtc has been described previously [21] (link). RPMI Medium 1640 supplemented with 5% bovine fetal serum (GIBCO, Grand Island, NY, USA), 100 IU mL−1 penicillin G, and 100 mg mL−1 streptomycin (Gibco-BRL, Grand Island, NY, USA) was employed. Dimethyl sulfoxide (DMSO) and propidium iodide (PI) were obtained from Sigma-Aldrich Chemicals Co. (St. Louis, MO, USA). Stearic acid and sodium taurodeoxycholate were purchased from Sigma-Aldrich (St. Louis, MO, USA), Lipoid S 100 (soya lecithin) was acquired from Lipoid (Ludwigshafen, KOLN, Germany), and Amicon Ultra 15, MWCO 100 K, was provided by Millipore (Billerica, MA, USA).
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3

Silica-based Enzyme Immobilization Protocol

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Tetraethyl orthosilicate (TEOS), triethanolamine (TEAH3), hexadecyltrimethylammonium bromide (CTAB), triethoxy(methyl)silane (TEMS), chlorotrimethylsilane (CTMS), trimethoxy(propyl)silane (TMPS), triethoxy(octyl)silane (TEOCS), pancreatic porcine lipase (L3126, Type II, 100–500 units/mg protein using olive oil with 30 min incubation, 30–90 units/mg protein using triacetin), tributiryne, tris(hydroximethyl)amino methane (TRIS) and sodium taurodeoxycholate were purchased from Sigma Aldrich (Madrid, Spain). Sodium chloride was purchased from AppliChem Panreac (Barcelona, Spain). Calcium chloride was acquired from Merck (Madrid, Spain). All the reagents were used without further purification.
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4

Lipid Nanoparticle Formulation and Characterization

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All the phospholipids were provided by Avanti Polar Lipids and distributed by Sigma-Aldrich (Milan, Italy). Miglyol 812N was a gift from Sasol (Witten, Germany). Poly(lactide-co-glycolide) (PLGA) 75:25 (Resomer RG 752 H), trilaurin, ethyl acetate, benzyl alcohol, sodium taurodeoxycholate, Pluronic F68, Sepharose CL-4B, cholesterol and all other reagents were obtained from Sigma-Aldrich. Cremophor RH 60 (PEG-60 hydrogenated castor oil) was purchased from BASF (Ludwigshafen, Germany). All the solvents used were of analytical grade and purchased from Carlo Erba Reagenti (Milan, Italy). Solvent evaporation was carried out using a rotating evaporator (Heidolph Laborota 400, Heidolph Instruments, Schwabach, Germany) equipped with a vacuum pump (Diaphragm Vacuum Pump DC-4). TLC analyses were performed on silica gel aluminium plates (Macherey-Nagel, thick 25 µm, F254). HPLC analyses were carried out on a Waters instrument made up of 1525EF binary pump, W717 plus auto-sampler and 2996 PDA detector (Waters, Milan, Italy).
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5

Orlistat Formulation Development

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Orlistat (purity >99.0%) was purchased by Chongqing Zein Pharmaceutical CO., Ltd. (Chongqing, China). Solutol HS15 (polyoxyl 15 hydroxystearate), Kolliphor P 407 (poloxamer 407), Kolliphor PS 80 (polysorbate 80), and Myritol 318 PH (medium-chain triglycerides) were kindly given as a gift by CTC Bio Inc. (Hwaseong, South Korea). Lauroglycol 90 (propylene glycol monolaurate, type II), Labrafac PG (propylene glycol dicaprylate/dicaprate), Labrafil M 1944 CS (oleoyl polyoxyl-6 glycerides), Labrafil M 2125 CS (linoleoyl polyoxyl-6 glycerides), Labrasol (caprylocaproyl polyoxyl-8 glycerides), and Capmul MCM C8 EP (mono/diglycerides of caprylic acid) were kindly provided as a gift by MASUNG & CO., Ltd. (Seoul, South Korea). 4-nitrophenyl palmitate (p-NPP), lipase powder from porcine pancreas (L3126, Type II, 358 units/mg protein using olive oil or 50 units/mg protein using triacetin), sodium deoxycholate, and sodium taurodeoxycholate were all purchased from Sigma Aldrich Korea (Youngin, South Korea). All other chemicals were of reagent grade and used without further purification.
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6

Chromatographic Analysis of Phenolics

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Acetonitrile and formic acid obtained for chromatographic analysis, ethanol for extraction, and Folin-Ciocalteu reagent were provided by J.T. Baker (Phillipsburg, NJ, USA). The standards of phenolics and 2,2-diphenyl-1-picrylhydrazyl (DPPH), sodium bicarbonate, hydrochloric acid, pancreatin, sodium glycodeoxycholate, sodium taurocholate, sodium taurodeoxycholate, were purchased from Sigma Aldrich (St. Louis, MO, USA). Water was purified on a MilliQ system (Millipore S.A., Molsheim, France).
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7

Enzymatic Lipid Extraction Protocol

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Bromelain, diosgenin, asiaticoside, porcine group IB phospholipase A2 (pG-IB), egg yolk phosphatidylcholine, red phenol, sodium taurodeoxycholate (NaTDC), and potassium phosphate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Amenthoflavone was purchased from Atkins Chemicals (Chengdu, China).
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8

Preparation and Characterization of Aminoclay-Based Nanoparticles

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PEL was kindly provided by Daewon Pharm. Co., Ltd. (Seoul, Korea). Eudragit® RL PO and Eudragit® RS PO were obtained from Evonik Korea Ltd. (Seoul, Korea). 3-Aminopropyltriethoxysaline (ATPES, 99%), sodium taurodeoxycholate (NaTDC), and tolbutamide were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Lecithin (ca. 99.2% soy bean phosphatidylcholine) was purchased from Avanti lipid (USA). Magnesium chloride hexahydrate (98%) and other inorganic salts were obtained from Junsei Chemical Co., Ltd. (Tokyo, Japan). Aminoclay was prepared by the method reported by Yang et al. (2013 (link)). Acetone was purchased from Daejung chemical & metals Co., Ltd. (Gyeonggi-Do, Korea). All other chemicals were of analytical grade and all solvents were of high performance liquid chromatography (HPLC) grade.
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9

Lipid Synthesis and Characterization

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SM, sodium taurodeoxycholate, S1P, palmitic acid, DG, and Triton X-100 were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA). D-erythro-Sph, N-palmitoyl-Sph, and dihydro-Sph were purchased from Enzo Life Sciences, Inc. (Farmingdale, NY, USA). Phyto-Sph was purchased from Olbracht Serdary Research Laboratories (Toronto, Canada). Omega-biotinyl D-erythro-sphingosine (biotin-Sph), L-threo-Sph, and 1-deoxy-Sph were purchased from Avanti Polar Lipids, Inc. (Alabaster, AL, USA). C14-Sph and C16-Sph were purchased from Matreya, LLC (State College, PA, USA). Chlorophenol red-β-D-galactopyranoside (CPRG) was purchased from Roche Diagnostics (Mannheim, Germany). Precoated Silica gel 60 TLC plates were purchased from Merck (Darmstadt, Germany). The pHP45Ωaac vector49 (link) was donated by Dr. H. Niki, National Institute of Genetics, Japan. All other reagents were of the highest purity available.
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10

Measuring GBA Activity in DBS

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GBA activity was measured as previously described [20 (link)] Briefly, one 3.2 mm-diameter punch from each DBS sample was extracted in 200 ;L 0.2 M citrate phosphate buffer, pH 5.2 containing 1% Triton® X-100 (Sigma, St. Louis, MO) and 1% sodium taurodeoxycholate (≥97% purity, Sigma, St. Louis MO) in a 96-well plate. Substrate solution (12.5 mM 4-MUG, Sigma, St. Louis, MO) was prepared either with or without inhibitor (0.5 mM Conduritol B Epoxide, Toronto Research Chemicals). Inhibited or uninhibited substrate solution was mixed 2:1 with DBS extract and incubated for 20 h at 37 °C. To stop the reactions, 100 μL of 0.5 M EDTA (pH 11.5) was added to each well. An eight point 4-MU standard curve (0 – 0.67 μM) was prepared on each plate in duplicate. The plate was read in a fluorometer at 355 nm excitation and 460 nm emission wavelengths. GBA activity was determined by subtracting the background activity measured in the inhibited reaction from that in the uninhibited reaction. Disease cut-off (1.71 μmol/L/h) was established as described in methods section 2.6. The limit of blank (LOB=0.16 μmol/L/h) and limit of detection (LOD=0.41 μmol/L/h) for the fluorescence assay were established previously [20 (link)].
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