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5 protocols using ab233387

1

Characterization of KRAS Mutant Cell Lines

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The KRAS mutant human cell lines HCC44, NCI-H23, NCI-H2122, SW1573 and NCI-H1373 were purchased from ATCC. H1792 is a gift from Professor Liu Xiangguo of Shandong University and HCC44-Luc is a gift from Professor Lu Weiyue of Fudan University. HCC44 were infected with luciferase retrovirus (HBLV-luc-BSD, LV57072301) to generate HCC44-Luc cells, and addition of appropriate concentrations of BSD to screen. THP-1 was obtained from Chinese Academy of Sciences. All cells were cultured at 37 °C in a 5% CO2 humidified incubator and grown in RPMI 1640 or DMEM medium containing 10% fetal bovine serum and penicillin/ streptomycin (100 U/ml, Life Technologies). All cell lines were tested for mycoplasma contamination.
Protein samples were subjected to SDS-PAGE and transferred to Polyvinylidene difluoride (PVDF) membrane (Millipore, Bedford, MA). The membranes are incubated overnight at 4 °C in the appropriate primary antibody, then washed and incubated with the HRP-conjugated secondary antibody. Primary antibodies were as follows: TF (E9M6T, CST), ERK (4695, CST), P-ERK1/2 (4370, CST), AKT (P31749, Epitomics), P-AKT (Ser473) (ab81283, Abcam), CSF1(ab233387, Abcam), Bim (ab32158, Abcam) and GAPDH (AP0063, Bioworld).
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2

Immunohistochemical Profiling of Tumor Markers

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Paraffin blocks were cut into 5‐μm slices, then deparaffinized, rehydrated and processed for antigen retrieval by a standard microwave heating technique in antigen retrieval solution (pH = 8) (RecordBio, #RC016). Endogenous peroxidase activity was quenched by incubating the sections in 3% H2O2 for 25 min. The sections were incubated with 0.2% Triton X‐100 and 3% bovine serum albumin (BSA) in PBS for 1 h at room temperature and were then incubated overnight with primary antibodies at 4°C. Primary antibodies used for IHC include: rabbit anti‐HLA‐G (1:200, 79,769, Cell signalling technology), rabbit anti‐MMP2 (1:200, 40,994, Cell signalling technology), rabbit anti‐CSF1 (1:200, ab233387, Abcam), rabbit anti‐CSF1R (1:100, ab183316, Abcam) and rabbit anti‐PAX8 (1:1000, 10336‐1‐AP, Proteintech). After overnight, samples were washed in PBS and incubated with the secondary antibody. Slides were visualized using diaminobenzidine tetrahydrochloride (RecordBio), and nuclei were counterstained with haematoxylin.
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3

Immunohistochemistry for CSF1, Cre, and eGFP

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Immunohistochemistry, imaging, and quantification were performed as previously described [40 (link)]. Primary antibodies included rabbit anti-CSF1 (ab233387; Abcam), rabbit anti-Cre (69050; Novagen), or chicken anti-eGFP (ab13970; Abcam). Secondary antibodies included Alexa Fluor 488 donkey anti-rabbit (Jackson ImmunoResearch, 711-545-152), Alexa Fluor 555 donkey anti-rabbit (A32794, Invitrogen), or Alexa Fluor 488 donkey anti-chicken (703-545-155, Jackson ImmunoResearch).
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4

Western Blot Analysis of Neuroinflammatory Markers

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On the 3rd day after SNT, the L3/L4 DRGs were collected and immediately frozen after the mice were sacrificed. The tissue was lysed in RIPA buffer containing phosphatase and protease inhibitors (Beyotime, Shanghai, China). A BCA protein assay kit (Beyotime) was used to determine the concentration of protein. The proteins were transferred to polyvinylidene fluoride membranes after gel electrophoresis and then incubated with primary antibodies at 4°C overnight after blocking with 5% nonfat dry milk in TBS + Tween. The primary antibodies were as follows: rabbit anti-IL-6 (1:1000, ab6672, Abcam), rabbit anti-c-Jun (1:1000, Cat. No. D151652, Sangon), rabbit anti-Cd44 (1:500, ab51037, Abcam), rabbit anti-Timp1 (1:1000, ab109125, Abcam), rabbit anti-Csf1 (1:1000, ab233387, Abcam), and β-actin rabbit mAb (1:1000, AC026, Abclonal, Wuhan, Hubei, China), and were processed with goat anti-rabbit IgG (1:4000, AS014, Abclonal) at room temperature for 1 h. The signals of target proteins and β-actin were detected by a chemiluminescence detection system (Tanon4600, Shanghai, China). Relative protein expression levels were normalized using β-actin as an internal reference, and the band intensity was analyzed using ImageJ software (National Institutes of Health, Bethesda, MD, United States).
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5

Discriminating HSC-derived Macrophages from Microglia

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The Cxcr4CreER/WtR26CAG-LSL-tdT model was used to discriminate HSC-derived macrophages from microglia32 (link). Adult Cxcr4CreER/WtR26CAG-LSL-tdT mice received tamoxifen (5 × 1 mg intraperitoneally) to label HSCs. Mice underwent 28 days tamoxifen washout before subsequent experiments. Recombination efficiency was assessed for circulating CD11b+CD115+ Ly6C+ monocytes by flow cytometry and exceeded 86% in all mice. Mice underwent 45 min MCAO and were processed for immunohistochemistry at days 1, 2, and 3 after MCAO induction (n = 3 each). HSC-derived macrophages were defined as tdTomato+Iba1+ and microglia as tdTomatoIba1+-cells. Antibodies for co-staining in this model were: rat anti-RFP (Chromotek 5F8, 1: 500), goat anti-Iba1 (Abcam ab5076, 1: 500), rabbit anti-Osteopontin (Abcam ab63856, 1:2000), rabit anti-MCSF (Abcam ab233387, 1:2000), and rabbit anti-MMP12 (Abcam ab128030, 1:2000). Rabbit antibodies were detected using the biotin/tyramine amplification procedure and Streptavidin-AF488. Percent overlap of microglia and HSC-derived macrophages with M-CSF, Osteopontin, and MMP12 was examined in the striatal infarct in three 40x confocal view-fields per animal captured with an LSM900 microscope (Zeiss).
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