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7 protocols using anti myd88

1

Western Blot Analysis of Inflammatory Signaling

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The proteins were extracted with RIPA lysis buffer and PMSF; then, the protein quantification was conducted with a BCA protein quantification kit. Processed protein samples were collected for 8–10% SDS-PAGE electrophoresis and transferred on PVDF membranes. The membranes were blocked with 1× TBST containing 5% skimmed milk powder for 1 h at room temperature. After membrane washing, the membranes were incubated with the primary antibodies listed below at a temperature of 4 °C overnight: anti-TLR4 (1:1000, Protein-tech, Wuhan, China), anti-NF-κB (1:1000, Protein-tech, Wuhan, China), anti-MyD88 (1:1000, Protein-tech, Wuhan, China), anti-AQP1 (1:1000, Protein-tech, Wuhan, China), anti-HO-1 (1:1000, CST, Boston, MA, USA), anti-Nrf2 (1:1000, Protein-tech, Wuhan, China), and anti-β-actin (1:1000, Affinity, Changzhou, China). The membranes were then incubated with horseradish peroxidase (HRP)-labeled goat anti-rabbit/mouse antibodies (1:3000, protein-tech, Wuhan, China) for 1 h at 37 °C, and the membranes were rinsed 6 times with 1× TBST to remove any remaining antibodies (5 min every time). The images were captured using an Automatic Electrophoresis Gel Imaging System (Tanon 5200 Multi, Shanghai, China).
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2

Comprehensive Western Blot Protocol for Immunological Markers

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The Western blot protocol used was previously described [7 (link)]. The primary antibodies included anti-TLR4 (Proteintech, China), anti-MyD88 (Proteintech), anti-NF-kB (R&D Systems, U.S.A.), anti-RIPK3 (Proteintech), anti-MLKL (Proteintech), anti-NLRP3 (ZEN BIO, China), anti-Caspase1 (Novus, U.S.A.), anti-Caspase8 (Proteintech), anti-GSDMD (ABclonal, China), anti-IL-1β (R&D Systems), and anti-β-actin (Elabscience, China). An anti–rabbit (or goat or mouse or rat) antibody (ABclonal) were applied to the secondary antibody.
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3

Western Blot Analysis of Inflammatory Markers

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Radio‐immune precipitation assay lysis buffer (Beyotime, P0013B) was used for tissue and cell lysates. BCA assay kit (Beyotime, P0012S) was used for protein concentration determination. After 30 µg protein amount was separated using 4%–20% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis, it was transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% skim milk at 37°C for 2 h and then incubated with primary antibodies at 4°C overnight and secondary antibodies at 37°C for 1 h. After washing, the membranes were visualized by an ECL Kit (MedChemExpres) and quantified with ImageJ software. All experiments were repeated in triplicate for statistics. Following primary antibodies were used: anti‐iNOS (1:1000, Proteintech), anti‐COX‐2 (1:1000, Proteintech), anti‐IL‐6 (1:1000, Proteintech), anti‐TLR4 (1:1000, Proteintech), anti‐MYD88 (1:1000, Proteintech), anti‐NF‐κB‐p65 (1:1000, Affinity), anti‐NF‐κB‐p‐p65 (1:1000, Affinity), anti‐CD74 (1:1000, Abcam), β‐Actin (1:2000, Abcam).
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4

Investigating MYCN and SESN1 signaling

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Primary antibodies anti‐MYCN and anti‐SESN1 were purchased from Abcam (UK), and anti‐MyD88, anti‐GAPDH, and anti‐β‐Tubulin were purchased from Proteintech (Wuhan, Hubei, China). Cell Counting Kit‐8 (CCK‐8) was bought from Bimake (Shanghai, China). Matrigel was bought from Corning (NY, USA). HiSpeed Plasmid Maxi Kit was bought from Qiagen (Germany). jetPRIME was purchased from PolyPlus Transfection Co. (Illkirsch, France). TLR signaling pathway inhibitor Hydroxychloroquine‐d4 sulfate (HCQ) was purchased from MCE (USA).
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5

Histological Analysis of Liver Tissue

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Preparation of paraffin or cryostat tissue sections was performed as described previously [52 (link)]. The sliced liver paraffin sections were then stained with H&E and Sirius Red. For immunohistochemistry (IHC), cryostat sections were incubated with anti-F4/80, anti-CD11b and anti-Gr-1 antibodies (BD Pharmingen, San Diego, CA, USA) followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies. For fluorescence staining, cryostat sections were incubated with anti-MyD88, anti-α-SMA, anti-collagen I, anti-NLRP3, and anti-CXCL2 antibodies (ProteinTech, Chicago, IL, USA) followed by incubation with Alexa Fluor 488-conjugated secondary antibodies (Invitrogen, Carlsbad, CA, USA). Sections were evaluated under a microscope (DP71, OLYMPUS, Tokyo, Japan) for bright-field and fluorescence microscopy.
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6

Antibody Validation for m6A Studies

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The following antibodies were used in this study: anti-m6A (Synaptic Systems, 202003 for m6A-seq; Abcam, ab208577 for m6A-IP qPCR), anti-YTHDF1 (Proteintech, 66745–1-lg), anti-TRAF6 (Abcam, ab181622), anti-TRAF3 (Proteintech, 18099-1-AP), anti-β-actin (HuaAn, R1207–1), anti-Flag (Sigma-Aldrich, F3165), anti-MYC (Abcam, ab32), anti-DDX60 (Abcam, ab139807), anti-MyD88 (Proteintech, 23230-1-AP), anti-phosphor-p65 (Cell Signaling Technology, 3033), anti-phosphor-IκBα (Cell Signaling Technology, 2859), anti-TRIF (Proteintech, 23288-1-AP), anti-p65 (Proteintech, 10745-1-AP), anti-IκBα (Proteintech, 10268-1-AP), anti-BCLAF1 (Proteintech, 26809-1-AP), anti-THRAP3 (Proteintech, 19744-1-AP), anti-TRAF3 (Proteintech, 18099-1-AP), anti-phospho-IKKα/β (Cell Signaling Technology, 2078), anti-IKKα (HuaAn, ER30911), anti-IKKβ (HuaAn, ER1706-13), anti-p38 (HuaAn, ET1602-26), phospho-p38 (Cell Signaling Technology, 9211), anti-phospho-JNK (HuaAn, RT1488), anti-JNK (HuaAn, RT1550), anti-ERK1/2 (Cell Signaling Technology, 9102), phospho-ERK1/2 (HuaAn, ET1610–13), normal rabbit IgG (Cell Signaling Technology, 2729) and normal mouse IgG (Cell Signaling Technology, 5946).
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7

Protein Expression Profiling in Neuroinflammation

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Total protein is isolated from cells and spinal cord tissue. The extract was quantified with BCA reagent and equilibrated to the same volume. The same amount of protein was loaded into the combs of different SDS-polyacrylamide gels before electrophoresis. Then transfer the protein bands to a polyvinylidene fluoride (PVDF) membrane, and block with 5% skimmed milk powder for 2 hours and then incubate overnight at 4°C with appropriate primary antibodies as follows: anti-TLR4 (CST), anti-MyD88 (Proteintech), anti-IκBα (CST), anti-p-IκBα (CST), anti-p65 (CST), anti-p-p65 (CST), anti-GAP43 (CST), anti-MAP2 (CST), anti-Arg-1(CST), anti-iNOS (Proteintech), anti-COX-2 (Abcam), anti-NeuN (Abcam), anti-Cleaved Caspase 3 (CST), anti-Bcl-2 (Proteintech), anti-BAX (Proteintech), anti-β-Actin (Proteintech) and anti-GAPDH (Abcam). After the next day, the bands were treated with the matching secondary antibodies for 2 hours. Subsequently, the band was detected by the imaging system (Tanon), and the ImageJ software was used for quantitative analysis.
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