Each reaction mixture was loaded onto a QuantStudio 3D Digital PCR Chip (Thermo Fisher Scientific) and cycled for 40 cycles using standard conditions. End-point fluorescence data were analyzed through the QuantStudio 3D Digital PCR Instrument and the QuantStudio 3D Analysis Suite (Thermo Fisher Scientific), according to the manufacturer’s instructions.
Quantstudio 3d analysis suite
The QuantStudio 3D Analysis Suite is a software package designed for the analysis of data generated by the QuantStudio 3D Digital PCR System. The suite provides tools for data processing, visualization, and interpretation to support quantitative digital PCR applications.
Lab products found in correlation
6 protocols using quantstudio 3d analysis suite
Digital RT-PCR for GSDMB Isoform Quantification
Each reaction mixture was loaded onto a QuantStudio 3D Digital PCR Chip (Thermo Fisher Scientific) and cycled for 40 cycles using standard conditions. End-point fluorescence data were analyzed through the QuantStudio 3D Digital PCR Instrument and the QuantStudio 3D Analysis Suite (Thermo Fisher Scientific), according to the manufacturer’s instructions.
Digital PCR for mtDNA quantification
from IDT (Coralville, Iowa). The 3D digital PCR was used according to the
manufacturer’s protocol. QuantStudio™ 3D Digital
PCR Master Mix v2 and individual QuantStudio 3D digital PCR 20K Chip kit v2
were purchased from Thermo scientific (Applied Biosystems, Waltham, MA).
Prepared sample mix was loaded into ChIP using QuantStudio 3D Digital PCR
Chip Loader (Thermo scientific). Chip PCR amplification was performed in a
ProFlex PCR System (96 °C for 10 min; 39 cycles of 60 °C for 2
min and 98 °C for 30 sec; and 60 °C for 2 min). After
amplification, each chip was loaded into the QuantStudio 3D Digital reader.
Data were analyzed using QuantStudio 3D Analysis Suite (Thermo scientific).
All biological repeats were performed in at least triplicate.
ΔmtDNA primers F: TTGCTTTTTCTTTATATGTTTTG; R:
TTTATTTAATTTGGTTAAACAAGAGGT. ΔmtDNA probes 5’
6-FAM/ZEN/3’ IBFQ:
/56-FAM/AGGATCGTA/ZEN/ACATTTTATTTTTTTGCTTTA/3IABkFQ/.
Wildtype primers F: GCTTTTTCTTTATATGTTTTGTG.
R: TCACCTTCAGAAAAATCAAATGG wildtype mtDNA probes
5’ HEX/ZEN/3’ IBFQ:
/5HEX/AATTATAGT/ZEN/AATTGCTGAACTTAACCGGGC/3IABkFQ/
Quantitative RT-PCR Analysis of Cardiac Biomarkers
Digital PCR for mtDNA quantification
Real-Time and Digital PCR for Gene Expression
SARS-CoV-2 sgRNA Detection by Digital PCR
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