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Bx40 epifluorescence microscope

Manufactured by Olympus
Sourced in Japan

The BX40 epifluorescence microscope is a high-performance microscope designed for advanced fluorescence imaging applications. It features an epi-illumination system that provides uniform illumination across the entire field of view, ensuring optimal fluorescence excitation and detection. The microscope is equipped with a range of fluorescence filter sets, allowing for the visualization of multiple fluorescent labels simultaneously. The BX40 is a versatile instrument that can be used for a variety of applications, including cell biology, neuroscience, and molecular biology research.

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10 protocols using bx40 epifluorescence microscope

1

Quantifying Liver Lipids and Adipocyte Size

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Liver cryosections (10 µm) were stained with Sudan III (Carl Roth GmbH + Co. KG, Karlsruhe, Germany) to identify tissue lipids. Nuclei were counterstained with hemalaun (Merck, Darmstadt, Germany). Images were taken using the Zeiss Axio Imager.A1 microscope and the amount of lipids quantified by using the Image J 1.48 software (National Institutes of Health, Bethesda, MD, USA). From each animal (n ≥ 6 in each group), 3–6 liver slices were prepared, and 10–15 microscopic fields analyzed.
To assess tissue architecture, paraffin sections (1.5 µm) of the liver and adipose tissue were deparaffinized and stained with hemalaun and eosin (HE, both Merck, Darmstadt, Germany). HE histology of visceral gonadal white adipose tissue (termed VAT in the following) was used to determine the adipocyte size as described previously [26 (link)]. Images were taken using an Olympus BX40 epifluorescence microscope.
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2

Localization of Plasmodium lncRNAs via RNA FISH

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RNA FISH was performed with slight modifications as described by Sierra-Miranda, 201259 (link) on mixed-stage asexual and gametocyte stage parasites. Antisense RNA probes for seven nuclear lncRNAs; -TARE4, −178, −13, −1494, −271, −4076 -ch9, -ch14 and two cytoplasmic lncRNAs; −267, −643, were labeled by in vitro transcription in the presence of fluorescein. RNA FISH was also performed using sense RNA probes as controls. Briefly, fixed and permeabilized parasites were incubated with RNA probes overnight at 37 °C. Parasites were washed with 2x SSC three times for 15 min each at 45 °C followed by one wash with 1x PBS for 5 min at room temperature. The slides were mounted in a Vectashield mounting medium with DAPI and visualized using the Olympus BX40 epifluorescence microscope. Images were treated with ImageJ. Pictures are representative of 15-20 positive parasites examined.
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3

Quantitative Histological Analysis of Liver Steatosis

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Random liver samples (fragments obtained from all lobes) were fixed in freshly
prepared formalin (1.27 mol/L formaldehyde, 0.1 M phosphate-buffered saline, pH
7.2) and embedded in Paraplast Plus¯ (Sigma-Aldrich, USA). Non-serial sections
(5 μm) were placed on several glass slides and stained in hematoxylin-eosin.
Thus, 10 microscopic fields per animal (n=5) were analyzed at random in a blind
analysis, utilizing digital images (TIFF format, 36-bit color, 1360×1024 pixels)
acquired with an Olympus DP71 camera and an Olympus BX40 epifluorescence
microscope (Olympus, Japan). The evaluation of steatosis was based on the point
counting method using a test system composed of 36 test points (PT).
The volume density (VV) was estimated by the following formula:
VV [steatosis, liver] = PP [steatosis]/PT[liver], where PP is the number of points located in fat droplets and
PT is the total number of points in the test system (28 (link)).
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4

Histological Analysis of BAT Adipocytes

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BAT samples were fixed in formalin (freshly prepared in 1.27 M formaldehyde, 0.1 M phosphate-buffered saline, pH 7.2) and embedded in Paraplast Plus (Sigma-Aldrich, USA) for non-serial 5-µm thick sections. These sections were placed onto glass slides for hematoxylin/eosin staining and digital images were acquired randomly (TIFF format, 36-bit color, 1,360×1,024 pixels) using an Olympus DP71 camera and an Olympus BX40 epifluorescence microscope (Olympus, Japan). At least 10 photomicrographs per animal were randomly measured with the software Image-Pro Plus 5.0 (Media Cybernetics, USA). Photomicrographs were used for selection of fat droplets. The digital images of the droplets were analyzed and their areas calculated; the resulting data are shown in a histogram.
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5

Histological Analysis of Rat Tissues

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Pancreas, liver, and retroperitoneal fat samples (n = 5−6 rats from 5 to 6 litters per group) were removed and fixed in 4% paraformaldehyde for 24 h. Subsequently, the samples were dehydrated in an alcohol-increasing series of concentrations. After diaphanization in xylene, the samples were embedded in histological paraffin. Slices of 5-μm thickness were prepared for staining with hematoxylin and eosin (H&E). In the pancreas and fat slices, islets (40 per animal, 40 × magnification) and retroperitoneal fat (20 per animal, 20 × magnification) photomicrographs were randomly acquired using an Olympus DP71 camera coupled to an Olympus BX40 epifluorescence microscope (Olympus, Tokyo, Japan). ImageJ for Windows (Open Source) was used for analysis. Liver slices (30 fields per animal, 20 × magnification) were examined under a light microscope. These values were classified as previously described for the magnitude of steatosis (32 (link)). Thus, steatosis was graded as follows: 0 (none to 5% of hepatocytes affected), 1 (>5%−33% affected), 2 (>33%−66% affected), and 3 (>66% affected). The predominant distribution pattern of steatosis was graded as follows: 0 (zone 3), 1 (zone 1), 2 (azonal), or 3 (panacinar).
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6

Immunofluorescence Staining of iPSC-Derived Cultures

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iPSC-derived cultures were grown on coverslips and fixed in 4% paraformaldehyde/4% sucrose (w/v) in phosphate-buffered saline (PBS) solution. Cells were permeabilized in PBS with 0.4% v/v Triton X-100 for 2 × 7 min at room temperature (RT), then blocked in PBS with 10% v/v goat serum for 2 h at RT. GAD2 mouse monoclonal primary antibody (Chemicon, MAB351), diluted in PBS with 5% v/v goat serum (1:250), was applied for 2 h at RT. Goat anti-mouse Alexa Fluor 488 secondary antibody (Life Technologies A21131), diluted in PBS with 5% v/v goat serum (1:1000), was applied for 1 h at RT. Coverslips were washed three times for 5 min with PBS after each antibody application. Coverslips were then incubated with DAPI (Thermo Fisher Scientific; 1:5000 in PBS) for 5 min before being washed in PBS and briefly in dH2O, then mounted using Prolong Diamond Anti-Fade Mounting Solution (Thermo Fisher Scientific). Images were acquired on an Olympus BX40 Epifluorescence microscope using HCImage imaging software and processed using ImageJ.
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7

Immunofluorescence Assay of Phosphorylated RNA Polymerase II in Plasmodium falciparum

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Plasmodium falciparum asexual stage parasites were fixed onto slides using 4% paraformaldehyde for 30 min at RT. Slides were washed three times using 1× PBS. The parasites were permeabilized with 0.1% Triton-X for 30 min at RT, followed by three washes with 1× PBS. Samples were blocked overnight at 4°C in IFA buffer (2% BSA, 0.05% Tween-20, 100 mM glycine, 3 mM EDTA, 150 mM NaCl and 1× PBS). Slides were incubated for 1 h at RT with anti-RNA polymerase II CTD phospho serine 2 antibody (Abcam ab5095; 1:250) followed by an incubation with donkey anti-rabbit dylight 550 antibody (Abcam ab98489; 1:500) for 1 h at RT. Slides were washed with 1× PBS and mounted using Vectashield mounting medium with DAPI. Images were acquired using the Olympus BX40 epifluorescence microscope.
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8

Adipose Tissue Histological Analysis

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Mice were sacrificed and VAT was dissected. VAT was then fixed in zinc formalin overnight and embedded in paraffin. Paraffin sections were deparaffinized, microwaved and washed in PBS with 0.3% Triton (PBST). Subsequently, unspecific binding sites were blocked using PBST and 1% BSA for 1 h at room temperature. AT was stained with primary antibodies at 4°C overnight. For AT analysis, AT was stained using the macrophage marker Mac-2 (CL8942AP; 1:1000, Cedarlane; Burlington, Canada) and the fat cell marker Perilipin A (ab3526; 1:200; Abcam, Cambridge, U.K.). For proliferation studies, macrophages were stained against Mac-2 and the proliferation marker PCNA (ab15497; 1:200; Abcam). DAPI
(1:10,000; Thermo Fisher Scientific, Schwerte, Germany) was used for nuclear staining. Appropriate secondary antibodies were selected and incubated for 1 h at room temperature. For AT analysis, images were taken using the Olympus BX40 epifluorescence microscope. For proliferation studies, AT was studied using an inverted confocal microscope (FV1000 Olympus, Hamburg, Germany).
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9

Blastocyst Cell Number Quantification

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Embryo quality (Fukui et al., 1991; O'Hara et al., 2014) was evaluated by total cell number (TCN), inner cell mass (ICM) cell number, and trophectoderm (TE) cell number. For this purpose, TCN, ICM and TE cell numbers were determined in day-8 blastocysts as described by Thouas et al. (2001) . Briefly, before the fixation and staining steps, embryos were exposed to 1 µg/ml RNase for 1 h at 38.5°C. After incubation, blastocysts were washed in 0.01 M PBS containing 1 mg/ml PVP, stained with 100 µg/ml PI in PBS-PVP with 0.2% (v/v) Triton X-100 for 30 s, repeatedly washed in PBS-PVP, and then fixed in PBS-PVP containing 4% (w/v) paraformaldehyde and 1 µg/ml Hoechst 33342 for 15 min. After repeated washing in PBS-PVP, blastocysts were placed on microscope slides with cover slips containing a small drop of glycerol. ICM and TE cell numbers were visualized in an Olympus BX40 epifluorescence microscope with a fluor objective equipped with a 330-490 nm excitation filter and a 420-520 nm emission filter to distinguish TE cell nuclei (red) from ICM (blue), (Fig. 4). In total, 49 day-8 blastocysts were used in three replicates.
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10

Cumulus Cell Viability Evaluation

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After maturation, CC viability was evaluated. Cumulus cells were incubated for 10 min at 37°C in PBS medium with 2.5 mg/l fluorescein diacetate fluorochrome and 2.5 g/l trypan blue stain. Then, cells were washed in PBS medium and observed under an Olympus BX40 epifluorescence microscope with a 409 fluor objective equipped with a 330-490 nm excitation filter and a 420-520 nm emission filter at ×200 magnification. Live CC are visible in green fluorescence, whereas dead ones show a characteristic blue staining under white light (Hoppe & Bavister, 1984; Fig. 1) . In total, 512 COC were matured in three replicates and at least 400 CC per treatment were analyzed in each replicate.
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