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Bacillus subtilis

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Bacillus subtilis is a Gram-positive, spore-forming bacterium commonly found in soil and the gastrointestinal tract of humans and animals. It is a model organism for the study of bacterial growth, sporulation, and gene regulation. Bacillus subtilis is widely used in research and industrial applications, such as the production of enzymes, antibiotics, and biofuels.

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11 protocols using bacillus subtilis

1

Mycosynthesized AgNPs Bactericidal Evaluation

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Bactericidal activity of mycosynthesized silver nanoparticles was evaluated against Escherichia coli (MTCC 7410), Salmonella typhi (MTCC 733), Bacillus subtilis (MTCC 121) and Staphylococcus aureus (MTCC 7443) and all test pathogens were procured from Microbial Type Culture Collection, Chandigarh, India. Inoculum of test pathogens was prepared to obtain 5 × 105 CFU (Colony forming unit) and bactericidal activity was determined via CFU assay. In brief, Mueller–Hinton agar plates were supplemented with silver nanoparticles with different concentrations (25, 50, 75 and 100 μg/mL). Test inoculum was smeared onto the plates and incubated for 24 h at 37 °C and one control was maintained without addition of silver nanoparticles. The colonies were counted and validated with the control plate to determine the effect of nanoparticles (Sondi and Salopek-Sondi, 2004 ). Minimal Inhibitory Concentration was determined by broth micro-dilution technique based on the protocol described by Sarker et al. (2007) (link). Resazurin dye was used as a growth indicator to check the efficacy of nanoparticles against the test organisms. Gentamicin was used as positive control and bacterial growth in the plate was inspected visually as well as ELISA microtitre plate reader.
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2

Synthesis and Characterization of Metal-Based Nanomaterials

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The metal precursors such as nickel nitrate hexahydrate [Ni(NO3)2.6H2O; (99.99%)], sodium molybdate dihydrate [Na2MoO4.2H2O; (99.5%)], sodium hydroxide [NaOH; (97%)], and Urea [CO(NH2)2; (99.5%)] were purchased from sigma Aldrich. All the chemicals were of analytical grade and used without further purification. Deionized water was used as a solvent throughout the synthesis of the material. Acridine orange (AO), 2,2-diphenyl-1-picryl-hydrazyl-hydrate (DPPH), Hydrogen peroxide (H2O2), 2',7'-dichlorodihydrofluorescein diacetate (H2DCFDA), 2,3,5-triphenyl tetrazolium chloride (TTC), Propidium Iodide (PI), 4',6-diamidino-2-phenylindole (DAPI), potassium persulfate, trichloroacetic acid and other reagents and chemicals were purchased from HiMedia Laboratories Pvt. Ltd., (Mumbai, India). The pathogenic bacterial strains of Bacillus subtilis, Staphylococcus aureus, Pseudomonas aeruginosa and Escherichia coli were obtained from the Microbial Type Culture Collection (MTCC), Chandigarh, India.
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3

Antibacterial Efficacy of R-AuNPs and RSALE

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The disc diffusion method [19 (link)] was used to determine the antibacterial properties of RSALE and R-AuNPs. For antibacterial assay analysis, pure cultures of Staphylococcus aureus (ATCC 25923), Escherichia coli (ATCC 25922), and Streptococcus pyogenes (ATCC 19615) were obtained from American Type Culture Collection. However, Bacillus subtilis (MTCC 8114) and Proteus vulgaris (MTCC 1771) were obtained from the Microbial Type Culture Collection and Gene Bank (MTCC), housed at the Institute of Microbial Technology (IMTECH), Chandigarh, India. The suspensions of the strains tested were standardized to 0.5 McFarland. The suspension was obtained from overnight trypticase soy broth (TSB) cultures and placed on the surface of Mueller–Hinton (M.H.) agar for the study, as mentioned earlier. During the experiment, 50 µL of various concentrations of R-AuNPs (10, 20, 40, 60 and 80 mg/mL) and various concentrations of crude RSALE (10, 25, 50, 75, and 100 mg/mL), negative control (PBS) and positive control amoxicillin (25 mg/mL) were added to the wells of MH agar plates. The experiments were conducted in triplicate, and the agar plates were incubated overnight at 37 °C. Following that, the diameter of the inhibitory zone was determined. The experiment was conducted in triplicates in the same experimental conditions.
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4

Bacterial Strains for Microbiological Studies

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Salmonella enterica subsp. enterica, serovar Typhimurium (strain 12023) was a gift from Prof. D. Chakravortty (Indian Institute of Science, Bangalore, India). Escherichia coli was a gift from Prof. S. Mahadevan (Indian Institute of Science, Bangalore, India). Enterobacter cloacae (MTCC #7097), Bacillus subtilis (MTCC #441) and Staphylococcus aureus (MTCC #3160) were procured from the Microbial Type Culture Collection and Gene Bank (MTCC; Imtech, Chandigarh, India).
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5

Antibacterial and Antifungal Efficacy Evaluation

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Analytical grade silver nitrate (AgNO3, 99% pure), tetracycline, kanamycin, nutrient agar, potato dextrose agar, Mueller–Hinton agar used in the present study are purchased from Himedia Lab, Ltd., Mumbai, India. The endophytic bacteria Pantoea anthophila (GenBank accession no. MN077163) identified earlier by 16S ribosomal RNA gene sequencing from W. indica were pure cultured and stored in the Department of Biotechnology, Vinayaka Mission's Kirupananda Variyar Engineering College, Salem. Bacterial pathogens such as Gram-positive Staphylococcus epidermidis (MTCC737), Bacillus subtilis (MTCC1133), Staphylococcus aureus (MTCC2940), Gram-negative Escherichia coli (MTCC40), Proteus mirabilis (MTCC425), Salmonella typhi (MTCC733), Klebsiella pneumoniae (MTCC2405) and fungal strains of Aspergillus niger (MTCC404), Candida albicans (MTCC183) and Penicillium chrysogenum (MTCC947) were obtained from Microbial Type Culture Collection (MTCC), Chandigarh.
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6

Microbial Pathogen Culture Collection and Characterization

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All the test microbial pathogens such as Staphylococcus aureus (MTCC 7443), Bacillus subtilis (MTCC 121), Bacillus cereus (MTCC 430), Staphylococcus epidermidis (MTCC 435), Escherichia coli (MTCC 7410), Klebsiella pneumonia (MTCC 7407), Salmonella typhi (MTCC 733), Shigella flexneri (MTCC 1457), Vibrio parahaemolyticus ((MTCC 451), Xanthomonas campestris (MTCC 7908), and Candida albicans (MTCC 183) were procured from Microbial Type Culture Collection and Gene Bank (MTCC; Chandigarh, India).
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7

Antimicrobial Activity Evaluation

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The chemicals that are used in the present study were purchased from Himedia Laboratories Pvt. Ltd., Mumbai, India. The pathogens Bacillus subtilis (MTCC 10403), Escherichia coli (MTCC 443), Pseudomonas aeruginosa (MTCC 424), Micrococcus luteus (MTCC 1809), Staphylococcus aureus (MTCC 1144), Salmonella enterica typhimurium (MTCC 98), Klebsiella pneumonia (MTCC 10309), Bacillus cereus (MTCC 1272), Klebsiella aerogenes (MTCC 2822), and Pseudomonas fluorescens (MTCC 667) were received from Microbial Type Culture Collection (MTCC) and Gene Bank, Chandigarh, India. In the current study, the instruments used were microplate reader (Multiskan FC, Thermo Fisher Scientific, Mumbai, India), centrifuge (Remi CPR-30 plus, Mumbai, India), Vortex Shaker (SPINIX, Kolkata, India), PVDF syringe filter (0.22 μm; Thermo Fisher Scientific, Mumbai, India), CO2 incubator (Thermo Fisher Scientific, Mumbai, India), and shaking incubator (Thermo Fisher Scientific, Mumbai, India).
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8

Antimicrobial Evaluation of Cell Lines

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Bacillus subtilis (Microbial Type Culture Collection and Gene Bank [MTCC] 121), Staphylococcus aureus (MTCC 96), S. epidermidis (MTCC 435), Escherichia coli (MTCC 433), Klebsiella pneumoniae (MTCC 109), and Pseudomonas aeruginosa (MTCC 1934) were used for this experiment, and they were obtained from the Microbial Type Culture Collection (MTCC), Chandigarh, India, and the mouse embryonic fibroblast cell line (3T3) was obtained from the National Center for Cell Science (Pune, India).
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9

Antimicrobial Evaluation of Leaf Extract

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The antimicrobial activity of the leaf extract was performed by selecting the food borne pathogens such as bacteria and fungi. For antibacterial assay, indicator organisms are Staphylococcus aureus (MTCC 3103), Escherichia coli (MTCC 9537), Enterobacter aerogenes (MTCC 8558), Pseudomonas aeruginosa (MTCC 10306), Klebsiella pneumoniae (MTCC 10309), Salmonella typhi (MTCC 3224), Shigella flexneri (MTCC 9543), and Bacillus subtilis (MTCC 1305) were collected from Microbial Type Culture Collection (MTCC), Chandigarh, India. Nutrient agar medium and Muller Hinton agar medium was used for maintenance of cultures and antimicrobial activity, respectively. For antifungal assay, fungal cultures are Fusarium oxysporum (NCIM 1043), Aspergillus niger (NCIM 512), Penicillium citrinum (NCIM 766), Trichoderma viridae (NCIM 1051), and Candida albicans (NCIM 3471) were collected from National Collection of Industrial Microorganisms (NCIM), Pune, India.
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10

Phytochemical Analysis and Antimicrobial Evaluation of Lichen Extracts

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The lichens specimen was collected from the trees growing around Amarkantak town and was identified from Tropical Forest Research Institute, Jabalpur (M.P.), India (fig. 1). The dried lichens were powdered and extracted in soxhlet apparatus for defatting with petroleum ether. The defatted lichen material was dried and then exhaustively extracted with acetone and ethanol by continuous soxhlet extraction method. The extracts were concentrated under reduced pressure to yield semisolid mass and were stored in well closed container for further study. Standard procedures for qualitative chemical screening were undertaken to characterize chemical constituents in petroleum ether, acetone and ethanol extracts i.e., alkaloids, glycosides, terpenoids, saponins, tannins and flavonoids[9 ].
All reagents and chemicals were of analytical grade. Usnic acid, carrageenan, histamine, and dexamethasone were purchased from Sigma Chemical Co. (USA). Indomethacin was procured from Zydus Cadila Healthcare Ltd, India. Bacillus subtilis and Staphylococcus aureus, Escherichia coli and Pseudomonasa eruginosa were procured from Microbial Type Culture Collection and gene bank (MTCC); Institute of Microbial Technology, Chandigarh, India.
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