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16 protocols using anti thy1

1

Phenotypic Characterization of Lymphocytes

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Cells isolated from spleens and graft-draining axillary and brachial lymph nodes (dLN) were stained with anti-CD4 (BD Biosciences), anti-CD8 (Invitrogen) and anti-Thy1.1 (BD Biosciences). For phenotypic analysis cells were also surface-stained with anti-PD-1 (BioLegend), anti-2B4 (BD Biosciences or eBioSciences), anti-Thy1.1 (BD Biosciences), anti-LAG-3 (BioLegend), anti-CD127 (BioLegend), anti-KLRG-1 (eBioSciences), anti-CD44 (BioLegend or BD Biosciences), and anti-CD48 (BioLegend). Absolute numbers of lymphocytes from the spleen and draining lymph nodes were calculated using a Cellometer Auto T4 Cell Viability Counter (Nexcelom) according to the manufacturer’s instructions. Samples were analyzed on an LSRII flow cytometer (BD Biosciences). Data was analyzed using FlowJo 9 software (Treestar, San Carlos, CA) and Prism 6 software (GraphPad Software Inc.). For intracellular cytokine staining, lymphocytes were restimulated ex vivo with 1 μg/mL phorbol 12-myristate 13-acetate (PMA) (Sigma Life Sciences) and 1 μg/mL ionomycin (Sigma Life Sciences) where indicated, in the presence of 1 μg/mL Brefeldin A (BD Biosciences) for 4 hours. The Fix/Perm intracellular staining kit (BD Pharmingen) was used to detect IL-2 (BD Biosciences), TNF (BioLegend), and IFN-γ (BD Biosciences), according to manufacturer’s instructions.
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2

Glucose Titration in T Cell Activation

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Splenocytes were isolated and prepared as a single-cell suspension. 3×106 WT and 2B4KO OT-I T cells, respectively, were resuspended in 1.5 mL of complete media (glucose-free RPMI-1640 supplemented with 10% FCS, 2 mM L-glutamine), 100 U/mL penicillin, 100 μg/mL streptomycin, 10 mM HEPES, and 0.5 mM 2-mercaptoethanol) in a 24-well flat-bottomed plate at 37°C in a 5% CO2, humidified atmosphere. A D-glucose solution of 200g/L (Gibco by Life Technologies) was titered into the glucose-free complete media and diluted on a half-log scale. Cells were then stimulated with SIINFEKL N4 peptide at 1 nM for 5 days. After 5 days in culture cells were harvested and stained with anti-CD8 (BD Horizon), anti-Thy1.1 (BD Biosciences or BioLegend), anti-CD244 (eBioSciences), anti-Va2 (BD), anti-CD127 (BioLegend), anti-CD62L (BD), anti-KLRG-1, anti-Vb5 (BD), anti-CD44 (BD), 7AAD (BD) and AnnexinV (BioLegend), anti-IL-2 (BD), anti-IFN-g (BD) as described by the manufacturer. As described above, samples were analyzed on an LSRII flow cytometer (BD Biosciences) and data was analyzed using FlowJo 9 software (Treestar, San Carlos, CA) and Prism 6 software (GraphPad Software Inc.).
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3

Glucose Uptake in 2B4-Deficient OT-I T Cells

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To assess the ability of 2B4-deficient OT-I T cells to take up glucose, 104 WT and 2B4KO OT-I T cells were transferred into naïve C57BL/6 hosts and infected them with 104 colony forming units (CFU) of OVA-expressing Listeria monocytogenes (LM-OVA) two days. 14 days after infection, the animals were sacrificed and spleens were harvested. The cells were isolated and resuspended in a single cell solution in PBS. 2×106 splenocytes were stained with anti-CD4 (BD Biosciences), anti-CD8 (Invitrogen) and anti-Thy1.1 (BD Biosciences), anti-CD44 (eBioSciences), anti-CD44 (BD Biosciences) for 30 minutes at 4°C. Cells were washed twice in 250 μl of PBS and then resuspended in 200 μl of 50 μM 2-NBDG (Thermofisher) and incubated at 37°C for 30 minutes. Cells were washed with PBS and then analyzed on an LSRII flow cytometer (BD Biosciences). Data was analyzed using FlowJo 9 software (Treestar) and Prism 6 software (GraphPad Software Inc.).
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4

Flow Cytometric Analysis of Activated T Cells

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Antibodies were ordered from BD Biosciences (CD8, Thy1.1, Thy1.2, CD25, CD44). Cells were analyzed on a FACSCalibur or a FACSLSRII cytometer (BD Biosciences). Data were analyzed using FlowJo (Treestar Inc., CA) or Diva (BD Biosciences) software. For phospho antibody labeling, after ex-vivo restimulation cells were fixed in ice-cold 1.6% paraformaldehyde for 15 min. Cells were permeabilized with 90% methanol and stored at −20°C. Cells were labeled with anti-CD8, anti-Thy1.1, and anti-phospho antibodies specific for Erk and p38 (BD Biosciences) for 1 h in FACS buffer (HBSS, 1% FCS, 0.1 mM EDTA).
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5

Multicolor Flow Cytometry Panel

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Fluorescently labeled anti-Thy1.1 (OX-7), anti-CD25 (PC61), labeled anti-CD4 (GK1.5), anti-CD8 (53-6.7), anti-CD44 (IM7), anti-CD69 (H1.2F3), anti-CD38 (90), anti-CD152 (UC10-4B9), anti-CD357 (DTA-1), anti-IL-10 (JES5-16E3), anti-CD278 (17G9), anti-CD279 (RMP1-30), anti-CD103 (2E7), anti-CD62L (MEL14), anti-CCR7 (4B12), anti-Ly-6a/E(D7), anti-Foxp3 (FJK-16s), anti-IFN-γ (XMG1.2), anti-IL-17A (eBio17B7), anti-CD4 biotin (RM4-4), anti-CD4 (RM4-5), anti-CD45.1 (A20), anti-CD45.2 (104), anti-Bcl-2 (BCL/10C4), CD16/32(2.4G2), and eFluor®506 fixed viability dye were purchased from BD Pharmingen, BioLegend or eBioscience. Biotinylated neuropilin-1 pAb (BAF566) was purchased from R&D Systems.
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6

Negative Bead Purification of Murine Immune Cells

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Spleens and lymph nodes were removed from C57BL/6 or Lag3−/− mice, processed and stained for negative magnetic bead purification using the following biotinylated Abs: anti-CD4 (1:500) (BioLegend) anti-CD8α (1:500) (BioLegend), anti-CD11b (1:400) (BioLegend), anti-CD19 (1:500) (BioLegend), anti-B220 (1:500) (BioLegend), anti-CD25 (1:300) (BioLegend), anti-Ter119 (1:300) (BioLegend), anti-gdTCR (1:300) (Invitrogen), and anti-CD11c (1:250) (BioLegend). For cell sorting, transduced cells were stained with biotinylated anti-Thy1.1 (BD-Pharmingen) and detected with BUV395 Streptavidin (BD Biosciences). Cells were sorted on an Aria II (BD Biosciences).
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7

Monoclonal Antibodies for Cell Analysis

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Commercially available monoclonal antibodies used in this study were as follows: FITC or PerCP anti-CD4; FITC or APC anti-CD8; APC or PE anti-CD25; FITC anti-CD45.1, anti-CD45.2, anti-Thy1.2, and anti-BrdU; and anti-CD3 (2C11) mAbs (BD Pharmingen, CA). PE or APC anti-Foxp3 antibodies were purchased from eBioscience (CA). Carboxyfluorescein diacetate succinimidyl ester (CSFE) was purchased from Molecular Probes (Invitrogen, CA), fluorescein isothiocyanate (FITC) was purchased from Thermo Fisher Scientific, and 5-bromo-2′-deoxyuridine (BrdU) was purchased from Sigma-Aldrich.
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8

T Cell Depleted Bone Marrow Transplant

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Bone marrow was collected from WT, Ifnar−/−, and IL18−/− B6 mice and T cell depleted using anti-CD4 (GK1.5, anti-CD8 [2.43], and anti-Thy1.2 [BD] and low-tox guinea pig complement [Cedarlane]). Recipient mice were irradiated with two doses of 550 rad with a 3-h interval between irradiations and reconstituted with 107 T cell–depleted bone marrow cells after the second dose of irradiation.
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9

Multiparameter Flow Cytometry Analysis

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Single cell suspensions were prepared and washed in ISCOVES medium. After centrifugation, erythrocytes were lysed in Red Cell Removal Buffer (RCRB; 156 mM NH4Cl, 10 μM EDTA, 1 mM Na2CO3) and FCS was subsequently added (3 (link)). Cells were counted and 106 cells per sample were used for staining. Cells were washed twice in PBS containing 3% FCS and 0.1% NaN3 and were subsequently stained with optimal concentrations of anti-IgM, anti-IgD, anti-B220, anti-CD25, anti-CD21, anti-CD43, anti-Thy 1.2, anti-NK1.1, or anti-CD138 (all from BD Bioscience). Fluorochrome-labeled streptavidin and the apoptosis marker merocyanine (Sigma Aldrich, Munich, Germany) were incubated separately. Samples were subsequently acquired on a FACSCalibur (BD Bioscience) and analyzed using the CellQuest software (BD Bioscience).
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10

Multiparametric Flow Cytometry Analysis

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Single-cell suspensions from BM and spleen were treated with Gey’s solution to remove red blood cells and resuspended in PBS supplemented with 2% BSA. The cells were then stained with a combination of fluorescence-conjugated antibodies. APC-conjugated anti-B220, anti-IgM, anti-CD4 and anti-CD44, and PE-Cy7-conjugated anti-B220, anti-IFNγ, anti-CD25 and anti-CD23 were purchased from eBioscience. PE-conjugated anti-CD43, anti-CD21, anti-Thy1.2, anti-CD5, anti-CD8, and anti-IgD were purchased from BD Biosciences. Samples were applied to a flow cytometer (LSRII, Becton Dickinson). Data were collected and analyzed using FACSDiva software (Becton Dickinson) or FlowJo software (Tree Star).
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