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Pal autosampler

Manufactured by Shimadzu
Sourced in Japan, Germany

The PAL autosampler is a laboratory instrument designed for automated sample handling and injection. It is capable of precise and efficient sample introduction into analytical instruments, such as gas chromatographs (GC) and liquid chromatographs (LC), to facilitate high-throughput and consistent sample analysis.

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4 protocols using pal autosampler

1

Peptide Conjugation and Purification

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The dimethylamino acid (1.0 equivalent), NHS (1.2 equivalents), and DIC (1.0 equivalent) were first dissolved in DMSO (10 μL), and then diluted with anhydrous DCM (30 μL). The solution was incubated overnight at room temperature. A solution containing five peptides, NSILTETLHR, LSLVPDSEQGEAILPR, LSEPAELTDAVK, YGGFLR, and SVILLGR dissolved in 10 μL of 10% DIEA/DMF, was added to the activated dimethylamino acid. The solution was incubated overnight at room temperature. The coupling was then quenched with 20% formic acid/H2O on ice. The solution was first dried with a speed-vac (Savant SC100, Thermo Fisher) then lyophilized (Labconco FreeZone Plus). After drying, the sample was desalted via an empty spin column (Thermo Fisher) packed with hydrophilic-lipophilic-balanced (HLB, Oasis®) reversed-phase sorbent. The sample was then dried and reconstituted with FA/H2O for liquid chromatography (LC)-MS analysis (Shimadzu HPLC pumps/controller, Kyoto, KYT, Japan and HTC PAL autosampler, Carrboro, NC).
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2

HPLC-MS Analysis of Pharmaceutical Compounds

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Standards were prepared in 50% MeOH. Samples and standards were loaded onto a 1 mm × 75 mm C12 column (ACE 3 C18 PFP, Mac-Mod) using a Shimadzu HPLC system and PAL auto-sampler (20 μL per injection) at a flow rate of 70 μL min−1. The column was maintained at 45°3 using a column oven. The column was connected inline to an electrospray source coupled to an LTQ-Orbitrap XL mass spectrometer (Thermo). Caffeine (2 pM μL−1 in 50% acetonitrile with 0.1% formic acid) was injected as a lock mass through a tee at the column outlet using a syringe pump at 45 μL min−1 (Harvard PHD 2000). Chromatographic separation was achieved with a linear gradient from 1% to 45% B in 6 min (A: 0.1% formic acid, B: 0.1% formic acid in acetonitrile) with an initial 1 min hold at 1% B and followed by 4 min wash at 100% B and equilibration for 8 min with 1% B (total 20 min program). Electrospray ionization was achieved using a spray voltage of 4.50 kV aided by sheath gas (Nitrogen) at a flow rate of 12 (arbitrary units) and auxiliary gas (Nitrogen) flow rate of 1 (arbitrary units). Full scan MS data were acquired in the Orbitrap at a resolution of 60,000 in profile mode from the m/z range of 110-220. Raw files were imported into Skyline v4.1 (MacCoss Lab) and peak areas for DPO were extracted using the small molecule workflow.
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3

In Vitro Metabolic Stability Assay

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Metabolic stability was determined as described in reference 14 (link). CD101 (1 μM) was incubated with liver microsomes and hepatocytes from Sprague-Dawley rats, cynomolgus monkeys, and humans or hepatocytes only from dogs with appropriate cofactors for up to 2 h at 37°C. Following incubation, samples were quenched with ice-cold methanol or acetonitrile (ACN), containing an appropriate internal standard and centrifuged to remove precipitated protein, and the supernatants were analyzed to quantitate the remaining parent. Samples from in vitro experiments were analyzed either by liquid chromatography-tandem mass spectrometry (LC-MS/MS) using an Agilent 6410 mass spectrometer coupled with an Agilent 1200 high-performance liquid chromatography (HPLC) device and a CTC PAL autosampler (microsomes) or an Applied Biosystems API4000 mass spectrometer coupled with a Shimadzu LC10 AD HPLC and a CTC PAL autosampler (hepatocytes). Two control agents (warfarin and verapamil) were analyzed under similar conditions. Data were converted to the percentage remaining by dividing by the time zero concentration value. Data were fit to a first-order decay model to determine half-life. Intrinsic clearance was calculated from the half-life and the protein concentrations.
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4

Comprehensive Amino Acid and Acylcarnitine Analysis

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Mass spectrometric analysis of amino acids (AS) and acylcarnitines (AC) was performed using a SCIEX Triple Quad 4500 System (AB SCIEX, Darmstadt, Germany) with Turbo Ion Spray Source (TIS) in combination with a HTC Pal autosampler and a Shimadzu UFLC system for flow injection analysis (FIA) according to a validated protocol [35 (link)]. Briefly, 10 µL serum was diluted 1:10 with methanol. After centrifugation, 10 µL of the supernatant was diluted with 100 µL of methanol-containing isotope-labeled standards (Chromsystems Germany). Samples were evaporated at 70 °C for 40 min and derivatized using 60 µL of 3 n butanolic-HCL (Chromsystems, Germany) at 65 °C. After evaporation the samples were reconstituted with 150 µL of the mobile phase (1/1 v/v methanol/water) analysed with a SCIEX 4500 quadrupole tandem mass spectrometer in multiple reaction monitoring (MRM). Concentrations of 26 AAs, 34 ACs, and free carnitine were quantified using ChemoView™ 1.4.2 software (AB SCIEX, Darmstadt, Germany).
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