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5 protocols using bca protein assay kit

1

Quantitative Analysis of MMP-9, D1R, and Cav1.2 in Rat Brain

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Quantitative measurement of MMP-9, D1R, and Cav1.2 in such rat brain structures as the vSTR was performed using a Rat MMP-9 ELISA Kit (Reddot Biotech, Kelowna, BC, Canada), a Rat Dopamine Receptor D1 (DRD1) ELISA kit (Reddot Biotech, Kelowna, BC, Canada), and Rat Voltage-dependent L-type Calcium Channel Subunit Alpha-1C ELISA Kit (Bioassay Technology Laboratory, Shanghai, China), respectively, following manufacturers’ protocols. Firstly, frozen brain structures were homogenized in cold buffer at pH 7.4 (0.32 M sucrose, 1 mM HEPES, 1 mM MgCl2, 1 mM NaHCO3, and 0.1 mM PMSF) containing cocktails of protease and phosphatase inhibitors (Sigma-Aldrich, Saint Louis, MO, USA), using a homogenizer ball (Bioprep-24, Allsheng, China) (10 s at 10,000 rpm). Then, homogenates were centrifuged for 5 min at 5000× g, the supernates were immediately removed, and protein concentration in the supernates was measured using a bicinchoninic acid assay (BCA) protein assay kit (Serva, Heidelberg, Germany). From each sample, 100 µg of protein was used in each ELISA assay. All data are expressed in ng/mL.
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2

Western Blot Analysis of EGFR Protein

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2D cultures and 3D constructs were lysed with RIPA buffer (R0278, Merck) containing protease inhibitor cocktail (11836153001, Roche, Basel, Switzerland). Total protein content was quantified with a BCA protein assay kit (39228, Serva, Heidelberg, Germany) and 5 or 10 μg of protein were loaded into 8% polyacrylamide gels and run by applying 225 V for 40 min. Afterwards, proteins were transferred to a PVDF membrane (IPVH07850, Merck) by applying 40 V for 2 h. The membrane was then blocked for 1 h with 4% (w/v) nonfat powdered milk in 0.2% PBS-Tween. Next, the membrane was incubated with primary antibodies anti-EGFR (700308, Invitrogen) at 1:1000 and anti-GAPDH (649201, Biolegend, San Diego, CA, USA) at 1:2000 for 1 h at room temperature. The membrane was then washed and incubated with secondary antibodies anti rabbit-HRP (ab6721, abcam) and anti mouse-HRP (ab6820, abcam), both at 1:1000 for 1 h at RT. Finally, the membrane was revealed for HRP detection with a SuperSignal West Pico Chemiluminescent Substrate (34080, Thermo Fisher Scientific, Waltham, MA, USA). Chemiluminescent images were taken in the ImageQuantTM LAS 4000 mini (GE HealthCare, Chicago, IL, USA). Protein bands were quantified using ImageJ software and expressed as a ratio between the protein of interest and the loading control. Each blot was repeated three times (N = 3).
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3

Quantification of Tissue MMP-9 by ELISA

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Quantitative measurement of MMP-9 in tissue homogenates was performed using a Rat Matrix Metalloproteinase 9 (MMP-9) ELISA Kit (Reddot Biotech, Kelowna, BC, Canada), following manufacturer’s protocol. Firstly, homogenates (see Section 2.5.1. Western blot) were centrifuged for 5 min at 5000× g. After this, the supernates were immediately removed and protein concentration was determined in each sample with a bicinchoninic acid (BCA) protein assay kit (Serva, Heidelberg, Germany). From each sample, 100 μg of protein was used in the ELISA assay. All data were expressed in ng/mL.
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4

BIIB021 Cytotoxicity Evaluation in T-24 Cells

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BIIB021 was purchased from Adooq BioScience (Irvine, USA). T-24 cell line was obtained from American Type Culture Collection (Manassas, United States). McCoy's 5a culture medium, trypsin-EDTA, fetal bovine serum (FBS), phosphate buffer saline (PBS), L-glutamine solution, and penicillin-streptomycin solution were supplied from Serana Europe (Pessin, Germany). Colorimetric XTT cell viability kit was from Biological Industries (Kibbutz Beit-Haemek, Israel). Dimethyl sulfoxide (DMSO) and BCA protein assay kit were from SERVA Electrophoresis GmbH (Heidelberg, Germany). RNA isolation and cDNA synthesis kits were from Thermo Scientific (Massachusetts, USA). Human Cancer Pathway Finder™ PCR array (PAHS-033Z) and SYBR green master mix (330500) were from Qiagen (Hilden, Germany). HSP90 ELISA kit was form YL Biont (Shanghai, China). Luciferase was supplied from Sigma Aldrich.
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5

3D Construct Protein Expression Analysis

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Briefly, 3D constructs were lysed with RIPA buffer (R0278; Sigma-Aldrich) containing protease inhibitor cocktail (11836153001, Roche, Basel, Switzerland). Total protein was quantified with BCA protein assay kit (39228, Serva, Heidelberg, Germany) and 5 μg of total protein were loaded into a polyacrylamide gel and run by applying 225 V during 40 min. Afterwards, proteins were transferred to a PVDF membrane by applying 40 V during 2 h at room temperature. The membrane was then blocked with 4% (w/v) nonfat powdered milk in 0.2% PBS-Tween for 1 h and then incubated with primary antibodies rabbit anti-FABP4 (ab23693, abcam) at 2 μg/mL and rabbit anti-vinculin (700062, Invitrogen) at 1/1000 during 1 h at RT. Finally, the membrane was incubated with Goat anti rabbit-HRP (ab6721, abcam) at 1/1000 for 1 h at RT and revealed for HRP detection with SuperSignal West Pico Chemiluminescent Substrate (34080; Thermo Fisher Scientific, Waltham, MA, USA). Chemiluminescent images were taken in the ImageQuantTM LAS 4000 mini (GE HealthCare, Chicago, IL, USA).
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