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Gal4 two hybrid system

Manufactured by Takara Bio
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The GAL4 Two-Hybrid System is a molecular biology tool used to detect and analyze protein-protein interactions. It employs the yeast transcription factor GAL4 to identify and study the interactions between two proteins of interest. The system provides a platform for screening and studying these interactions in a controlled cellular environment.

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11 protocols using gal4 two hybrid system

1

Cloning and Yeast Two-Hybrid Screening

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To construct the pGADT7-H vector, we amplified the CDS of H and fused it to GAL4 AD of the pGADT7 vector. The conserved domains of H were predicted by the Conserved Domain Search Service tool (https://www.ncbi.nlm.nih.gov/guide/domains-structures/). We amplified and fused three domains of H with GAL4 AD of the pGADT7 vector. We generated the pGADT7-HL using a similar strategy to that used for H. To generate pGBKT7-JAZs vectors, we amplified the CDSs of JAZs of tomato and fused them to the GAL4 DBD (DNA binding domain) of the pGBKT7 vector. We mixed the recombinant constructs and transformed them into yeast strain AH109. According to the manufacturer’s manual (Clontech), the Matchmaker GAL4 Two-Hybrid System was used for LiAc yeast transformation. The negative control was the combination of pGADT7 and pGBKT7-JAZs. SD-Leu-Trp (SD/−2) media were used for selecting the transformant. For scoring the interactions, transformants were diluted in H2O to 1 OD (OD600) and plated on SD/−Ade/-His/−Leu/−Trp (SD/−4) medium for 4 days.
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2

Yeast Two-Hybrid Screening of Plant Signaling

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The matchmaker GAL4 Two-Hybrid System (Clontech) was used to determine the self-activation and protein-protein interactions. The full coding sequences of IbHK1a, IbHK1b, IbHK5, IbHP1–IbHP5, and IbRR20–IbRR28 were amplified using KOD DNA plomerase (TOYOBO) based on the gene sequences with primers listed in Supplementary Table S2. pGADT7 (AD) and pGBKT7 (BD) vectors were double digested with EcoRI and BamHI to prepare the linearized carriers, and then the purified IbHP1–IbHP5 fragments were inserted into a pGBKT7 vector with the In-Fusion Cloning Kit (TRANSGEN). The remaining IbHKs and IbRRs were inserted into the pGADT7 vertor. After the detection of bait vector self-activation, bait plasmids and prey plasmids were cotransformed into the yeast competent cell AH109 via the lithium acetate-mediated transformation method, according to the manufacturer’s instructions. The transformants were primarily cultured in SD/-Leu/-Trp and SD/-Ade/-Leu/-His/-Trp media, and the colonies were cultured in SD/-Ade/-Leu/-His/-Trp medium with X-α-gal. pGBKT7-53 and pGADT7-T were used as positive controls, while pGBKT7-Lam and pGADT7-T were used as negative controls.
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3

Yeast Two-Hybrid Protein Interaction Assay

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Yeast two‐hybrid assays were conducted with the Y2H Gold yeast strain using the GAL4 two‐hybrid system (Clontech) following the manufacturer’s instructions. The pGADT7 and pGBKT7 vectors were used for plasmid constructions. Double dropout plates lacking Trp and Leu were used to select co‐transformed colonies. Protein interactions were detected by measuring the growth of colonies on QDO plates lacking Trp, Leu, Ade and His but containing AbA (100 ng/mL).
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4

Yeast Two-Hybrid Assay for Protein-Protein Interactions

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Yeast two‐hybrid (Y2H) assays were performed using the matchmaker GAL4 two‐hybrid system (Clontech, CA, USA) according to the manufacturer's instructions. The coding sequences of SAPK10 were digested with EcoRI and XhoI and cloned into the pGADT7 vector, the coding sequences of SAPK10 were digested with EcoRI and PstI and cloned into the pGBKT7 vector, and the coding sequences of bZIP72 were digested with NdeI and EcoRI and cloned into the pGBKT7 vector, respectively. Primers used were listed in Table S1. The resulting constructs were cotransformed into the yeast strain Y2H Gold (Clontech) and selected on synthetic medium lacking leucine, tryptophan and histidine with 0.04 mg ml−1 X‐α‐Gal and 100 ng ml−1 Aureobasidin A applied.
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5

Yeast-Two-Hybrid Assay for VvMYBA2 Interactors

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Y2H assay was performed using the Matchmaker GAL4 two‐hybrid system, according to the Clontech’s protocols. In brief, full‐length cDNAs of VvMYBA2w with EcoRI and BamHI sites were ligated into pGBKT7, which was used as a bait to screen the grape cDNA library. The mated yeast cells were screened on the SD/‐Leu‐Trp‐His‐Ade (QDO) plates, and putative positive clones were grown on the QDO plates. The interaction between individual clones and VvMYBA2w was then confirmed by retransforming them back into yeast strain Y2HGold, selected as described above, and subjected to an X‐α‐Gal test for further confirming the protein–protein interaction. In addition, the interaction of two VvMYBA2w‐interacting proteins (VvUBE2A and VvSAP5) and VvMYBA2r was also detected in this study.
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6

Quantitative Yeast Two-Hybrid Assay

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A Matchmaker GAL4 Two-Hybrid System was applied in this study (Clontech, PT3247-1). pGADT7-Ste5 plasmids were transformed into AH109 separately and selected on SC-Leu plate. pGBKT7-Ste7 plasmids were transformed into Y187 separately and selected on SC-Trp plate. A Trp+ transformant was mated with a Leu+ transformant on YPD and diploid cells were selected on SC-Leu-Trp plates.
The quantitative β-galactosidase assay was performed as described in the Yeast Protocols Handbook (Clontech, PT3024-1). Diploid cells were grown in liquid culture and lysed by freeze/thaw cycles in liquid nitrogen. Activities in the cell lysate were measured by using ONPG (Solarbio, O8040-1g) as a substrate. 1 unit of β-galactosidase is defined as the amount which hydrolyzes 1 μmol of ONPG to o-nitrophenol and D-galactose per min per cell. To remove the autoactivation of pGBKT7-Ste7, the unit measured for a diploid containing a pGBKT7-Ste7 plasmid and a void pGADT7 vector was subtracted from the unit of a diploid containing the same pGBKT7-Ste7 plasmid and a pGADT7-Ste5 plasmid. Three different colonies of one diploid strain were subjected to the assay and activities were measured in duplicates.
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7

Yeast Two-Hybrid Screening of ATG Interactions

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Yeast Two-Hybrid Screen Different ATG coding regions were cloned into DONR 207 (Invitrogen) by BP recombination. The resulting entry clones were transferred into a GAL4 binding domain bait vector pLAW10 by LR recombination. The effectors were transferred into a GAL4 activation domain prey vector pLAW11. Pairwise yeast two-hybrid screening was performed by mating using the Matchmaker GAL4 two-hybrid system (CLONTECH) according to the manufacturer's recommendations. The interactions were scored for their ability to grow on a selective media lacking His and adenine. Matings were replicated four times. The interaction network was created using Cytoscape v3.4.0.
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8

Yeast Two-Hybrid Screening of Desmin

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The Matchmaker GAL-4 two-hybrid system was used as described by the manufacturer (Clontech, Clontech Laboratories, Inc., Palo Alto, CA, USA). A cDNA fragment, encoding the NH2 terminus of mouse desmin (first 1–320 nucleotides), was inserted downstream of the GAL4-DNAbinding domain in the pGBKT7 bait vector. A yeast two-hybrid cDNA library (Clontech) derived from human heart muscle was screened for interacting proteins as described by the distributor. For interaction, positive clones were selected in a selection medium (SD/-Trp/-Leu,/-Ade/-His +X-α-galactosidase plates), as we have previously described [28 (link)].
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9

Investigating Protein-Protein Interactions Using Yeast Two-Hybrid System

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The matchmaker GAL4 Two‐Hybrid System (Clontech) was employed to investigate PPIs. The full‐length coding sequences of ZmPKSB, ZmTKPR1‐1 and ZmTKPR1‐2 were cloned into pGADT7 and pGBKT7 vectors. Amino acid substitution vectors, including pGBKT7‐ZmTKPR1‐1‐9M, pGBKT7‐ZmTKPR1‐2‐7M and pGADT7‐ZmTKPR1‐1‐4M, were constructed using fusion PCR. Co‐transformation of a pGADT7/prey plasmid and a pGBKT7/bait plasmid was performed in yeast strain AH109 and verified on selective media according to the manufacturer's instructions. Negative control vectors, pGADT7‐T7 and pGBKT7‐lam, were used, as well as a positive control with pGADT7‐T7 and pGBKT7‐53. Subsequently, vector co‐transformation into yeast strains and yeast screening were conducted following the methods described in a previous study (An et al., 2020 (link)).
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10

Yeast Two-Hybrid Analysis of TaCHLI-7A

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Yeast two-hybrid analysis was performed using the GAL4 Two-Hybrid System according to the manufacturer’s instructions (Matchmaker; Clontech, USA). The full-length cDNA of TaCHLI-7A and Tachli-7A were cloned into the bait vector pGBKT7 and the prey vector pGADT7, respectively. Pairs of the plasmids BD and AD were co-transformed into yeast strain AH109 according to the manufacturer’s instructions. Transformants were first selected on plates containing a double-dropout SD medium (lacking Leu and Trp) and then tested on selective SD medium (lacking Leu, Trp, His, and Ade).
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