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Alexa fluor 488 goat anti rabbit igg

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 488 goat anti-rabbit IgG is a fluorescent-labeled secondary antibody. It is used for the detection and visualization of rabbit primary antibodies in various immunochemical applications, such as immunofluorescence, flow cytometry, and Western blotting.

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980 protocols using alexa fluor 488 goat anti rabbit igg

1

Immunofluorescent Detection of CASQ1 and RYR1

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Myotubes were fixed in methanol, permeabilized in PBS plus 0.15% Triton-X100 (Bio-Rad, Hercules, CA, USA), for 15 min, incubated in 3% BSA (Bovine serum albumin, Sigma Aldrich, Saint Louis, MO, USA) in PBS for 30 min, followed by a 120 min incubation in anti-CASQ1 (polyclonal antibody Abcam, Cambridge, UK) diluted 1:500 in PBS and 60 min incubation in Alexa Fluor 488 goat anti-rabbit IgG (Molecular probes, Carlsbad, CA, USA) diluted 1:1500 in PBS. All incubations were carried out at room temperature. In patient muscle, CASQ1 was co-localized with RYR1 following incubation of sections with polyclonal anti-CASQ1 (Abcam; 1:500) plus monoclonal anti-RYR1 (Thermo Fischer Scientific, Waltham, MA USA; diluted 1:10), followed by incubation with Alexa Fluor 488 goat anti-rabbit IgG (Molecular Probes Inc, Eugene, OR, USA), and successively by incubation with Alexa Fluor 546 goat anti-mouse IgG (Molecular Probes). Cells and muscle sections were examined under a Zeiss fluorescence microscope or a Leica confocal microscope equipped with hybrid and argon lasers.
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2

Quantifying Oxidative DNA Damage and DNA Damage Response

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Cells were seeded in 8-well Nunc™ Lab-Tek™ Chambered Coverglasses. Following treatments, cells were washed with PBS, fixed with 4% paraformaldehyde for 20 min and permeabilized with 0.1% Triton X-100 in PBS for 5 min. Fixed cells were blocked with 2% bovine serum albumin (BSA) in PBS for 1 h.
To test for the presence of DNA oxidative lesions using 8-OHdG immunoreactivity, cells were incubated with 100 µg/ml RNase A (Invitrogen) for 1 h at 37 °C, treated with 2 N HCl for 10 min and neutralized with 1M Tris–HCl pH 7.5 for 10 min [42] (link). After blocking, incubation with anti-8-OHdG was done overnight in 0.1% BSA. Alexa Fluor®488 rabbit anti-goat IgG (Molecular Probes; Invitrogen) in 2% BSA for 2 h at room temperature was used for detection.
Incubation with anti-p-H2AX antibody (Table 1) was done for 1 h at room temperature. Slides were washed 3 times with 0.1% Triton X-100 in PBS, and incubated with Alexa Fluor®488 goat anti-rabbit IgG (Molecular Probes; Invitrogen) for 2 h in blocking solution. After washing, cell nuclei were stained using 2 µg/ml 4′,6-diamidino-2-phenylindole (DAPI). Preparations were mounted (PBS-glicerol 1:1) and examined under a fluorescent microscope (Nikon E800).
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3

Immunofluorescence Analysis of Keratinocytes

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For immunofluorescence analysis of monolayer keratinocyte cultures, cells (5.5 × 104) were seeded into chamber slides (growth surface 1.7 cm2). After 24 h, the cells were fixed in cold 4% paraformaldehyde for 30 min and afterwards permeabilized in 1% BSA 0.5% Triton X-100 in PBS. As primary antibody against the FLAG tag a polyclonal anti-FLAG antibody (Sigma-Aldrich) (1:200 in PBS) was used. As secondary antibody Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen) (1:400 in PBS) was used. The cells were additionally analysed for COL7A1 expression. The cells were incubated with a rabbit serum directed against type VII collagen (kindly provided by Dr Alexander Nyström, Freiburg, Germany) diluted at 1:1000 in PBS. The secondary antibody used was Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen). Cells were analysed using an epifluorescence Zeiss Axiophot microscope (Carl Zeiss, Oberkochen, Germany).
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4

Immunofluorescence Staining Protocol for Tissue and Cell Samples

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The paraffin sections were dewaxed using xylene for 15 min three times and hydrated in 100%, 90%, 80%, and 70% EtOH. Antigen retrieval was performed by a microwave in boiling antigen retrieval solution (pH 6.0, Dako, CA, USA) for 2 min 20 s. The sections were stained with the rabbit Ki67 antibody (Abcam, IA, USA, 1:300) overnight at 4 °C, and then incubated with secondary antibodies, such as Alexa Fluor 594 goat anti-rabbit IgG or Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen, NY, USA, 1:1000), for 1 h at room temperature with 4,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich). For cell staining with phospho-EGFR1, phospho-ErBb4, or phospho-Hck antibodies, the cells were fixed with 4% paraformaldehyde for 30 min at room temperature; washed with PBS; and incubated with phospho-EGFR1 (Abcam, 1:300), phospho-ErBb4 (Abcam, 1:300), or phospho-Hck (Abcam, 1:300) antibodies overnight at 4 °C. The samples were then incubated with Alexa Fluor 594 goat anti-rabbit IgG or Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen, NY, USA, 1:1000) secondary antibodies for 1 h at room temperature with DAPI. Images of immunofluorescence staining were captured using a ZEISS LSM700 confocal microscope.
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5

Immunofluorescence Staining of Cultured Cells

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Primary cultured cells were rinsed with PBS three times for five minutes each, fixed in 4% paraformaldehyde/4% sucrose in PBS for 15 minutes, and permeabilized in PBS with 0.3% triton X-100 (PBS-T) for 10 minutes. Non-specific binding of antibodies was blocked by incubating cells with 1% bovine serum albumin (BSA, Sigma-Aldrich) and 5% normal goat serum (Vector Laboratories Inc. Burlingame, CA, USA) in PBS-T for one hour. Cells were stained with primary antibodies overnight at 4°C. After washing three times in PBS five minutes each, cells were incubated with appropriate secondary antibodies (Alexa Fluor® 488 goat anti-rabbit IgG, 1:500, Invitrogen; Alexa Fluor® 555 goat anti-mouse IgG, 1:500, Invitrogen; Alexa Fluor® 488 goat anti-rabbit IgG, 1:500, Invitrogen; Alexa Fluor® 555 goat anti-chicken IgG, 1:1000, Invitrogen) for one hour in the dark. Coverslips were then mounted with DAPI containing media (Vector Laboratories).
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6

Immunohistochemical Analysis of HDV Antigens

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Immunohistochemical analysis of HDV antigens (HDAg) was performed using rabbit anti-HDAg antiserum as previously characterized [27 (link), 28 (link)] for human salivary gland tissues. Staining of formalin fixed paraffin embedded (FFPE) human salivary gland tissue was performed using citrate (10mM sodium citrate, pH6.0, 0.05% Tween20) antigen retrieval, followed by 30 minute incubation in blocking solution (3% BSA in TRIS buffered saline [TBS]) at room temperature, incubation with primary antibody overnight at 4°C (1:400 for rabbit antiserum) and 1 hour room temperature incubation in labeled secondary antibody solution (Alexa Fluor 488 Goat Anti-Rabbit IgG, 1:500, Life Technologies). Slides were then mounted in Fluoromount G (Electron Microscopy Systems) containing DAPI counterstain. B-cell, (B220, Abcam catalog #AB64100, 1:250) and T-cells (CD3, Abcam, catalog #AB16669, 1:100) were detected in FFPE mouse tissues using the manufacturer’s recommended conditions. Secondary species-specific antibodies for B-cell b220 (Alexa Fluor 594 Goat Anti-Rat IgG, 1:500, Life Technologies) and T-cell CD3 (Alexa Fluor 488 Goat Anti-Rabbit IgG, 1:500, Life Technologies) were incubated for 1 hour at room temperature and mounted in Fluoromount G (Electron Microscopy Systems) containing DAPI counterstain.
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7

Immunohistochemical Analysis of HDV Antigens

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Immunohistochemical analysis of HDV antigens (HDAg) was performed using rabbit anti-HDAg antiserum as previously characterized [27 (link), 28 (link)] for human salivary gland tissues. Staining of formalin fixed paraffin embedded (FFPE) human salivary gland tissue was performed using citrate (10mM sodium citrate, pH6.0, 0.05% Tween20) antigen retrieval, followed by 30 minute incubation in blocking solution (3% BSA in TRIS buffered saline [TBS]) at room temperature, incubation with primary antibody overnight at 4°C (1:400 for rabbit antiserum) and 1 hour room temperature incubation in labeled secondary antibody solution (Alexa Fluor 488 Goat Anti-Rabbit IgG, 1:500, Life Technologies). Slides were then mounted in Fluoromount G (Electron Microscopy Systems) containing DAPI counterstain. B-cell, (B220, Abcam catalog #AB64100, 1:250) and T-cells (CD3, Abcam, catalog #AB16669, 1:100) were detected in FFPE mouse tissues using the manufacturer's recommended conditions. Secondary species-specific antibodies for B-cell b220 (Alexa Fluor 594 Goat Anti-Rat IgG, 1:500, Life Technologies) and T-cell CD3 (Alexa Fluor 488 Goat Anti-Rabbit IgG, 1:500, Life Technologies) were incubated for 1 hour at room temperature and mounted in Fluoromount G (Electron Microscopy Systems) containing DAPI counterstain.
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8

Immunohistochemical Analysis of Dopaminergic Neurons

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Coronal sections (35 µm)of striatum (AP from + 1.42 to + 0.14 from bregma) and SNc (AP from −3.16 to −3.52 from bregma) (Paxinos and Franklin, 2001 ) were cut with a cryostat and then collected free floating in five different series for immunohistochemistry. After being rinsed in TBS (Tris Buffered Saline), serial SNc sections were incubated for 1 h with blocking solution (Bovin Serum Albumin; 3% in TBS), then incubated overnight with TH primary antibody (Purified rabbit polyclonal antibody; 1:500 in 1% BSA in TBS; Merck Millipore, Darmstadt, Germany) and with a fluorescent marker of Nissl Bodies (Neurotrace; 1:150 in 1% BSA in TBS; Life Technologies, Grand Island, NY, USA). Sections were then incubated with a secondary antibody (AlexaFluor 488, Goat anti-rabbit IgG; 1:500 in TBS; Life Technologies) for 40 min, mounted on slides and coverslipped with mounting medium. Three representative striatal sections were incubated for 1 h with blocking solution (Goat Serum 5% in TBS), then incubated overnight with TH primary antibody (Purified rabbit polyclonal antibody; 1:500 in 1% Goat Serum in TBS; Merck Millipore, Darmstadt, Germany). Finally, sections were incubated with a secondary antibody (AlexaFluor 488, Goat anti-rabbit IgG; 1:500 in TBS; Life Technologies) for 40 min, mounted on slides and coverslipped with mounting medium.
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9

Immunofluorescence Staining of Hepatic Cells

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Isolated hepatocytes or LSECs were cultured on a coverslip (AGC Techno Glass Co., Shizuoka, Japan), fixed with paraformaldehyde for 5 min and blocked with SuperBlock blocking buffer (Thermo Fisher Scientific). The cells were incubated with an E-cadherin antibody (BD Biosciences, San Jose, CA, USA) and VE-cadherin antibody (Abcam) at 1:200 for 1 h at room temperature. Alexa Fluor 594 goat anti-mouse IgG and Alexa Fluor 488 goat anti-rabbit IgG (Life Technologies) were used as secondary antibodies for 1 h at room temperature with protection from the light. The cells were counterstained with DAPI and analyzed by fluorescence microscopy (Keyence Corporation, Osaka, Japan).
Mouse livers were mounted in Tissue-Tek O.C.T. compound (Sakura Finetek Japan Co Ltd., Tokyo, Japan) and frozen until preparation. Frozen sections were cut at 10-μm thickness and fixed in methanol for 10 min. Blocking was performed in PBS with 3 % bovine serum albumin (BSA). The slides were incubated with BMPER antibody (Abcam) at 1:200 in PBS overnight at 4 °C, and subsequently incubated with CD31 antibody (BD Pharmingen) at 1:100 in PBS for 1 h at room temperature. Alexa Fluor 594 goat anti-mouse IgG and Alexa Fluor 488 goat anti-rabbit IgG (Life Technologies) were incubated at 1:200 in PBS for 1 h at room temperature. The slides were counterstained with DAPI and analyzed using fluorescence microscopy.
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10

Immunofluorescence Analysis of Melanocytes

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Tissues were fixed upon slides with acetone, and then permeabilized with 0.1 µg/ml Triton X-100 in PBS. Tissues were incubated in 2.5% normal horse serum (Vector, Burlingame, CA, USA), followed by treatment with rabbit anti-ET-B antibody (Abcam Inc., Cambridge, MA, USA; 1:4000 dilution) and mouse anti-PMEL17 antibody (DAKO; 1:40). Tissues were incubated with Alexa Fluor® 488 goat anti-rabbit IgG and Alexa Fluor® 594 goat anti-mouse IgG (both from Life Technologies; 1:500), followed by nuclear staining with 4′6-diamidino-2-phenylindole (DAPI) (Life Technologies; 1:2000). Slides were mounted in Fluoromount-G® (Southern Biotech, Birmingham, AL, USA). Co-cultured NHEKs and NHEMs in 4-well culture slides were fixed with 4% paraformaldehyde in PBS and were quenched by 50 mM NH4Cl in PBS. The cells were then permeabilized with 50 µg/ml digitonin in PBS and were then incubated in PBS containing 0.2% gelatin, followed by treatment with rabbit anti-p62 antibody (MBL; 1:500) and mouse anti-PMEL17 antibody (DAKO Inc.; 1:500). Cells were then incubated with Alexa Fluor® 488 goat anti-rabbit IgG and Alexa Fluor® 594 goat anti-mouse IgG (both from Life Technologies; 1:1000). Slides were mounted in ProLong® Gold Antifade Reagent with DAPI (Life Technologies), and images were obtained with a Leica DM5500B digital microscope (Leica Microsystems, Bannockburn, IL, USA).
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