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8 protocols using proteome profiler human angiogenesis antibody array kit

1

Quantitative Angiogenesis Profiling of HBMEC Secretome

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For generation of HBMEC Conditioned Medium (CM), cells were plated on 6-well plates and after infection were maintained in a total volume of 1 ml per well. Conditioned culture media were collected at 24 hours post infection (hpi) and centrifuged for 5 min at 10,000 rpm at 4 °C and stored at −80 °C until use. Secretion of angiogenesis-related protein levels was detected using a Proteome Profiler Human Angiogenesis Antibody Array kit (R&D Systems) according to manufacturer’s instructions. Membranes were incubated with pools of two independent experiments (e.g.: Mock #1 + Mock #2, MOI 0.01 #1 + MOI 0.01 #2, etc.) for each experimental condition, in a total of 3 membranes for 6 biological replicas. Spots were detected with chemoluminescence and X-ray films were exposed for 1, 5, 10 and 15 minutes to detect differentially expressed proteins. Densitometric analysis was performed with UN-SCAN-IT gel analysis software and relative intensity values for each spot of the 1-minute exposed film was analyzed with GraphPad Prism software version 9.0.1.
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2

Quantifying Angiogenesis Factors in HBMEC Conditioned Media

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For generation of HBMEC Conditioned Medium (CM), cells were plated on 6-well plates and after infection were maintained in a total volume of 1 ml per well. Conditioned culture media were collected at 24 hours post infection (hpi) and centrifuged for 5 min at 10,000 rpm at 4 °C and stored at −80 °C until use. Secretion of angiogenesis-related protein levels was detected using a Proteome Profiler™ Human Angiogenesis Antibody Array kit (R&D Systems) according to manufacturer’s instructions. Membranes were incubated with pools of two independent experiments (e.g.: Mock #1 + Mock #2, MOI 0.01 #1 + MOI 0.01 #2, etc.) for each experimental condition, in a total of 3 membranes for 6 biological replicas. Spots were detected with chemoluminescence and X-ray films were exposed for 1, 5, 10 and 15 minutes to detect differentially expressed proteins. Densitometric analysis was performed with UN-SCAN-IT gel analysis software and relative intensity values for each spot of the 1-minute exposed film was analyzed with GraphPad Prism software version 9.0.1.
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3

Angiogenesis Cytokine Profile Analysis

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Angiogenesis-related cytokines were analyzed from the culture
supernatant. PMSCs were seeded at a density of 1 × 105 per
1ml of hydrogel per well in a 6-well plate. Culture supernatants were collected
at 24 hours, centrifuged to remove particulates and then assessed for the
relative levels of 55 angiogenesis-related cytokines using Proteome
Profiler™ Human Angiogenesis Antibody Array kit according to the
manufacturer's instructions (R&D Systems). Supernatants from a
monolayer cell culture as well as from AM-ECM hydrogel and growth media (no
cells) were also collected as negative controls. Stained membrane blots were
imaged on a Bio-Rad ChemiDoc MP, and images were analyzed using ImageJ software
with the Dot Blot Analysis plugin. Integrated density values obtained from
membrane images were then plotted using Microsoft Excel.
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4

Angiogenesis Regulation by Statins

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Cell culture medium (RPMI-1640, DMEM) and serum (fetal bovine serum (FBS)) were purchased from Invitrogen (Gaithersburg, MD, USA). Simvastatin, atorvastatin, lovastatin, and pravastatin were purchased from Sigma-Aldrich (St Louis, MO, USA). Calcein-AM was from BD Biosciences (San Jose, CA, USA), and generic chemicals were purchased from Sigma-Aldrich. The Proteome Profiler Human Angiogenesis Antibody Array Kit was purchased from R&D Systems (Minneapolis, MN, USA). Angiopoietin 2 siRNAs were purchased from Dharmacon (Lafayette, CO, USA). Binding immunoglobulin protein (BiP) and Hsp90α siRNAs were purchased from Qiagen (Valencia, CA, USA). Angiopoietin 2, BiP, and Hsp90α active protein were purchased from Abcam (Cambridge, UK). The rabbit polyclonal anti-angiopoietin 2 antibody was purchased from Abfrontier (Seoul, Korea), mouse monoclonal anti-BiP antibody from BD Biosciences (San Jose, CA, USA), rat monoclonal anti-Hsp90α antibody from Stressgen (Victoria, BC, Canada), mouse monoclonal anti-CD31 antibody from Dako (Glostrup, Denmark), and mouse monoclonal anti-BrdU antibody from Roche (Mannheim, Germany).
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5

Angiogenesis Factors in Amnion Hydrogel

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The presence of angiogenesis-related factors in hydrogel derived from
decellularized amnion ECM was also assessed. Amnion hydrogel was prepared as
discussed above without final polymerization at 37°C. Hydrogel solution
was analyzed with Proteome Profiler™ Human Angiogenesis Antibody Array
kit according to the manufacturer's instructions (R&D Systems).
Membrane images were analyzed using ImageJ software with the Dot Blot Analysis
plugin and integrated density values obtained from images were then plotted
using Microsoft Excel. Reference spot densities are also included to estimate
relative protein concentrations.
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6

Lenvatinib Cytotoxicity Assay Protocol

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Lenvatinib was purchased from AdooQ Bioscience LLC, and a solution of Lenvatinib was prepared by dilution with DMSO and stored at -20˚C. RPMI-1640 was obtained from Gibco (Thermo Fisher Scientific, Inc.). Trypan blue was purchased from MilliporeSigma. DMEM, minimum essential medium (MEM), and FBS were obtained from Wako Pure Chemical Industries, Ltd. Penicillin-streptomycin was obtained from Invitrogen (Thermo Fisher Scientific, Inc.). A cell cycle phase determination kit was obtained from Cayman Chemical Company, a protease inhibitor cocktail from iNtRON Biotechnology, and a Proteome Profiler Human Angiogenesis Antibody Array Kit from R&D Systems, Inc.
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7

Profiling Angiogenic Factors in HBMEC Conditioned Medium

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For the generation of HBMEC Conditioned Medium (CM), cells were plated on 6-well plates and, after infection, were maintained in a total volume of 1 mL per well. Conditioned culture media were collected at 24 h post-infection (hpi) and centrifuged for 5 min at 10,000 rpm at 4 °C and stored at −80 °C until use. Secretion of angiogenesis-related protein levels was detected using a Proteome Profiler™ Human Angiogenesis Antibody Array kit (R&D Systems) according to the manufacturer’s instructions. Membranes were incubated with pools of two independent experiments as follows: Membrane 1: Mock culture, experiment #1 + Mock culture, experiment #2; Membrane 2: MOI 0.01 experiment #1 + MOI 0.01 experiment #2; Membrane 3: MOI 0.1 experiment #1 + MOI 0.1 experiment #2). Spots were developed with chemoluminescence, and X-ray films were exposed for 1, 5, 10, and 15 min to detect differentially expressed proteins. Densitometric analysis was performed with UN-SCAN-IT gel analysis software version 7.1, and relative intensity values for each spot of the 1-min exposed film were analyzed via GraphPad Prism software version 9.0.1.
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8

Angiogenesis Inhibition by Simvastatin

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To study the mechanism of angiogenesis inhibited by simvastatin, the Proteome Profiler Human Angiogenesis Antibody Array Kit (R&D Systems) was used according to the manufacturer's instructions. The Human Angiogenesis Antibody Array Kit detects 55 different angiogenesis-related proteins (activin A, ADAMTS-1, angiogenin, angiopoietin1, angiopoietin2, angiostatin, amphiregulin, artemin, coagulation factor III, CXCL16, DPPIV, EGF, EG-VEGF, endoglin, endostatin, endothelin-1, FGF acidic, FGF basic, FGF-4, FGF-7, GDNF, GM-CSF, HB-EGF, HGF, IGFBP-1, IGFBP-2, IGFBP-3, IL-1β, IL-8, LAP, leptin, MCP-1, MIP-1α, MMP-8, MMP-9, NRG1-β1, PTX3, PD-ECGF, PDGF-AA, PDGF-AB, persephin, PF4, prolactin, serpin B5, serpin E1, serpin F1, TIMP-1, TIMP-4, thrombospondin-1, thrombospondin-2, uPA, vasohibin, VEGF, and VEGF-c). Briefly, membranes were blocked with array buffer 7 and then incubated with colon cancer conditioned media of CoLo320, NCI-H716, and SW48 cells overnight at 4 °C. The membranes were washed three times with 1 × wash buffer and incubated with the streptavidin-HRP (1 : 5000 dilution) for 30 min. After three washes of 10 min each, the membranes were incubated with the ECL Western Blotting Detection System (GE Healthcare, Buckinghamshire, UK) and exposed to X-ray film.
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