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Nis elements ar 3

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NIS-Elements AR 3.10 is an imaging software package designed for use with microscopes. It provides tools for image capture, processing, and analysis.

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8 protocols using nis elements ar 3

1

Visualizing Apoptosis and Necrosis in H9c2 Cells

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Changes in morphology of H9c2 cells were observed and imaged using an inverted epifluorescence microscope Nikon Eclipse TS100 with 10-40x air objectives (Nikon, Japan) equipped with a digital camera 1300Q (VDS Vosskühler, Germany) and the software NIS-Elements AR 3.10 (Laboratory Imaging, Czech Republic). Furthermore, the cellular viability was visualised using nuclei staining with Hoechst 33342 (Molecular Probes, OR, U.S.A.) and propidium iodide (PI; Molecular Probes, OR, U.S.A.), which are well-established and sensitive probes to determine apoptosis and necrosis: Hoechst 33342 is a blue-fluorescent probe (λex = 360 nm, λem = 460 nm) staining all nuclei. In apoptotic cells, chromatin condensation occurs and apoptotic cells can thus be identified as those with condensed and more intensely stained chromatin. The red-fluorescent (λex = 560 nm, λem = 630 nm) DNA-binding dye, PI, is unable to cross the plasma membrane of living cells, but readily enters necrotic (or late-stage apoptotic) cells and stains their nuclei red. H9c2 cells seeded in 12-well plates at a density of 75,000 cells per well were incubated with compounds under investigation (alone or in combinations) for 24 h. After that, cells were stained with 10 μg/mL Hoechst 33342 and 1 μg/mL PI for 20 min at room temperature.
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2

Microscopic Evaluation of Cellular Viability

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Cells were observed using an inverted epifluorescence microscope Nikon Eclipse TS100 with 10–40 × air objectives (Nikon, Japan) equipped with a digital camera 1300Q (VDS Vosskühler, Germany) and the software NIS-Elements AR 3.10 (Laboratory Imaging, Czech Republic). The cellular viability was visualized using nuclei staining with Hoechst 33,342 (Molecular Probes/Invitrogen, U.S.A.) and propidium iodide (Molecular Probes). Hoechst 33,342 is a blue-fluorescent probe (λex = 360 nm, λem = 460 nm) staining all nuclei. In apoptotic cells, chromatin condensation occurs, and apoptotic cells can be identified as those with condensed and more intensely stained chromatin. The red-fluorescent (λex = 560 nm, λem = 630 nm) DNA-binding dye, propidium iodide, cannot cross the plasma membrane of living cells, but readily enters necrotic (or late-stage apoptotic) cells and stains their nuclei red. PC12 cells seeded in 96-well plates at a density of 30,000 cells per cm2 were incubated with compounds under investigation (alone or in combinations) for 24 h. After that, cells had been stained for 10 min at 37 °C with 10 μg/mL Hoechst 33,342 and 1 μg/mL propidium iodide, twice washed with PBS and then assayed on the microscope.
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3

Mitochondrial Activity Assessment in NVCMs

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Mitochondrial activity was assessed in NVCMs using the JC1 probe (5,5′,6,6′-tetrachlor-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide; Molecular Probes/Invitrogen, Czech Republic). JC1 becomes non-specifically accumulated in cellular cytosol as a green fluorescent monomer (λex = 480 nm; λem = 535 nm). In metabolically-active mitochondria with polarized inner membrane, JC1 monomers flock into red fluorescent J-aggregates (λex = 560 nm; λem = 630 nm). Cells were seeded on 24-well plates and incubated for 24 h with tested compounds and then loaded with 3 μM JC1 for 15 min at 37 °C after which the medium was replaced with PBS. Photomicrographs were obtained using the epifluorescence inverted microscope Eclipse TS100 (Nikon, Japan) equipped with digital cooled camera (1300Q, VDS Vosskühler, Germany) and software NIS-Elements AR 3.10 (Laboratory Imaging, Czech Republic).
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4

Mitochondrial Activity Assessment with JC1

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Photomicrographs were obtained using the epifluorescence inverted microscope Eclipse TS100 (Nikon, Japan) equipped with digital cooled camera (1300Q, VDS Vosskühler, Germany) and software NIS-Elements AR 3.10 (Laboratory Imaging, Czech Republic). Mitochondrial activity was assessed using the JC1 probe (5,5´,6,6´-tetrachlor-1,1´,3,3´-tetraethylbenzimidazolylcarbocyanine iodide; Molecular Probes/Invitrogen, Czech Republic). JC1 becomes non-specifically accumulated in cellular cytosol as a green fluorescent monomer (λex = 480 nm; λem = 535 nm). In metabolically-active mitochondria with polarized inner membrane, JC1 monomers flock into red fluorescent J-aggregates (λex = 560 nm; λem = 630 nm). Cells were seeded on 6-well (H9c2) and 12-well (NVCM) plates and incubated for 24 h with tested compounds and then loaded with 2 µM JC1 for 30 min at 37 °C after which the medium was replaced with PBS.
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5

Quantifying Brown Adipocyte Morphology

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Formalin-fixed paraffin-embedded sections (3 µm) were prepared as described previously (Flachs et al., 2017 (link)). The size of BAT adipocytes was assessed using an antibody against sodium potassium ATPase (1:1000; ab76020, Abcam), which stains the plasma membrane, and the size of lipid droplets was detected using anti-perilipin 1 antibody (1:200; ab61682, Abcam), which stains the surface of lipid droplets. Only lipid droplets larger than 3 µm2 were evaluated (magnificence limitation). The morphometry data are based on measurements of 1000 brown adipocytes and 800 lipid droplets taken randomly from ten different sections per animal. UCP1 immunohistochemical staining was performed as described previously (Teodoro et al., 2014 (link)). Twelve images were taken in comparable areas on whole-tissue sections of scWAT (dorsolumbal WAT). Ratios of UCP1-positive and -negative areas were calculated. Digital images were captured using an Olympus AX light microscope and a Leica TCS SP8 confocal microscope. All analyses were performed using the imaging software NIS-Elements AR3.0 (Laboratory Imaging, Prague, Czech Republic).
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6

Histological Assessment of NAFLD and WAT

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Liver and epididymal WAT samples were fixed in 4% formaldehyde, embedded in paraffin, and sections of 5 µm thickness were stained using hematoxylin-eosin. The NAFLD histological scoring system [37 (link)] was used to assess the effect of omega-3 PUFAs administration on NAFLD progression. In epididymal WAT, macrophage marker MAC-2/galectin-3 was detected using specific antibodies (Cedarlane Laboratories; Burlington, NC, USA; 1:4000 dilution) and the number of crown-like structures (CLS) counted as before [38 (link)]. Morphometric analysis of WAT was performed using the imaging software NIS-Elements AR3.0 (Laboratory Imaging, Prague, Czech Republic).
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7

Imaging Cellular Morphology and Viability

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Changes in cellular morphology were observed and imaged using an inverted epifluorescence microscope Nikon Eclipse TS100 with 10–40x air objectives (Nikon, Japan) equipped with a digital camera 1300Q (VDS Vosskühler GmbH, Germany) and the software NIS-Elements AR 3.0 (Laboratory Imaging s.r.o., Czech Republic). The cellular viability was visualized using nuclei staining with Hoechst 33342 (Molecular Probes, USA) and propidium iodide (PI; Molecular Probes), which are well-established and sensitive probes to determine apoptosis and necrosis: Hoechst 33342 is a blue-fluorescent probe (λex = 360 nm, λem = 460 nm) staining all nuclei. In apoptotic cells, chromatin condensation occurs and apoptotic cells can thus be identified as those with condensed and more intensely stained chromatin. The red-fluorescent (λex = 560 nm, λem = 630 nm) DNA-binding dye, PI, is unable to cross the plasma membrane of living cells but readily enters necrotic (or late-stage apoptotic) cells and stains their nuclei red. H9c2 cells seeded in 12-well plates at a density of 75,000 cells per well were incubated with compounds under investigation (alone or in combinations) for 24 h. After that, cells were stained with 10 μg/mL Hoechst 33342 and 1 μg/mL PI for 10 min at 37°C.
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8

Adipocyte Morphometry and Macrophage Analysis

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These analyses were performed similarly as described previously [28 (link)]. Formalin-fixed paraffin-embedded sections (5 μm) were stained using hematoxylin–eosin for the morphometry of adipocytes, or processed by immunohistochemistry or immunofluorescence. The morphometry data are based on approximately 800 cells taken randomly from two to three different eWAT sections per animal. The presence of macrophages in CLS was detected using anti-Mac2 antibodies. The abundance of dying adipocytes marked by CLS in eWAT sections was expressed as % of all adipocytes. In immunofluorescence analyses, perilipin 1-negative adipocytes, surrounded by macrophages (F4/80+ cells) that formed CLS, were considered to represent dying adipocytes. Within the CLS, proliferating (Ki67 stained) nuclei were identified and their relative (% of all 4′,6-diamidine-2′-phenylindole dihydrochloride (DAPI) positive nuclei) content was quantified. All analyses were performed using the imaging software NIS-Elements AR3.0 (Laboratory Imaging, Prague, Czech Republic). For the primary and secondary antibodies specification, see Supplementary Table S7.
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