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2 protocols using epr5071

1

Immunofluorescence Staining Protocol

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The following antibodies and dilutions were used: acetylated tubulin mouse monoclonal 6-11B-1 (1:1,000 for IF and WB) (Sigma-Aldrich Cat# T7451); pericentrin rabbit polyclonal Poly19237 (1:500 for IF) (Covance Cat #PRB-432C, now BioLegend); Arl13b rabbit polyclonal (1:250–1:500 for IF) (Proteintech Cat# 17711-1-AP); N19-SSTR3 antibody (rabbit polyclonal) (Santa Cruz Cat #sc-11610, discontinued); IFT88 rabbit (1:500 for IF and WB) (GeneTex, Cat#79169); α-tubulin YL1/2 (1:1,000 for IF and WB), (ThermoFisher #MA1-080017); alpha-tubulin DM1a (1:1,000 for IF and WB) (ThermoFisher #62204); rabbit monoclonal anti-p60 EPR5071, (1:250 IF), (Abcam Cat# ab111881); rabbit polyclonal anti-KATNA1, (1:100–250 IF) (Proteintech Cat#17560-1-AP), anti-RPGRIP1L (Proteintech 55160-1-AP). Anti-rabbit GFP (1:250) (Life Technologies, #A11122); anti-mouse GFP (1:1,000) (Roche, #11063100). Secondary antibodies used were anti-mouse Rhodamine (1:1,000) (Jackson ImmunoResearch, #715-295-150); anti-rabbit FITC (1:1,000) (Jackson ImmunoResearch, #111-095-003); anti-rabbit Alexa647 (1:200) (Life Technologies, #A21245); anti-mouse Alexa647 (1:200) (Life Technologies, #A21236); Hoescht (1:1,000–2,000) (Molecular Probes, #H-3570).
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2

Generation and Characterization of Katanin Mutant Cell Lines

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HeLa TREx Flp-In cells were generated from HeLa TREx cells (Thermo catalog no. R71407) using the pFRT/lacZeo vector (Thermo catalog no. V601520) according to the vendor’s protocols. Kata-WT and kata-D210C cell lines were generated from the HeLa TREx Flp-In cells using pOG44 plasmid and the pcDNA5.0/FRT/TO vector containing EGFP-tagged full-length katanin-WT or -D210C (described in Plasmids section of Methods ). Genomic DNA was extracted from cells using the DNeasy Blood and Tissue kit (Qiagen); insertions were PCR amplified and sequenced. Cells were cultured in DMEM (High glucose with sodium pyruvate and L-glutamine, ThermoFisher) supplemented with 10% (v/v) FBS (Sigma-Aldrich) and hygromycin B (200 μg mL−1) at 37 °C and 5% CO2. Cells were confirmed to be mycoplasma free using a PCR-based method43 (link).
For western blotting, cells were cultured with doxycycline (10 ng mL−1 for 24 h) before lysis at 4 °C. The following antibodies were used: rabbit monoclonal anti-p60 katanin (1:1000; EPR5071; Abcam) and mouse monoclonal anti-GAPDH (1:1000; 1E6D9; Proteintech). Membranes were imaged using a LI-COR Odyssey Infrared Imager. As previously13 (link), Cell viability assays were conducted using CellTiter-Glo Luminescent Cell Viability Assay (Promega) according to the manufacturer recommendations. The luminescence signal was quantified using a Synergy Neo Microplate Reader.
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