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7 protocols using seeblue rainbow marker

1

Western Blot Analysis of Sema4C in CR4 Cells

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RIPA buffer (Sigma-Aldrich, USA) was used to prepare cell lysate of CR4 cells with protease inhibitors. SDS-PAGE (10% running gel following 5% stacking) was used to separate proteins. Pre-stained SeeBlue rainbow marker (Invitrogen, USA) was used to find the position of target gene bands. Gel transferred was performed using PVDF membranes and blocking was performed in 5% non-fat milk for 2h at room temperature. GAPDH (ab38168, Abcam) and Sema4C (ab135856, Abcam) rabbit polyclonal primary antibodies were used to incubate the membranes for 18h at 4ºC. HRP (IgG) (Goat Anti-Rabbit, ab6721, Abcam) secondary antibody was then used to further incubate the membranes for 2 h at room temperature. Signals were produced using secondary antibody and data were normalized using ImageJ v.148 software.
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2

MALAT1, TGFA, and β-Actin Protein Analysis

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RIPA buffer (Sigma-Aldrich, USA) was used to lyse cells with Complete Protease Inhibitor Cocktail (Roche, USA). Cell lysates were transferred to 1.5 mL tube and kept at −20°C before use. SDS-PAGE was conducted to separate the cellular proteins. Proteins were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins was referred to the Pre-stained SeeBlue rainbow marker (Invitrogen, USA) loaded in parallel. The following antibodies were used: MALAT1 (Santa Cruz, USA), TGFA (Abcam, MA, USA), and β-actin (Sigma, USA). Blots were detected using a Kodak film developer (Fujifilm, Japan).
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3

Epithelial-Mesenchymal Transition Protein Analysis

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Cell lysates were lysed by RIPA buffer (Sigma-Aldrich, USA) with Complete Protease Inhibitor Cocktail (Roche, USA). Cell lysates were transferred to 1.5 mL tube and kept at −20°C before use. SDS-PAGE was conducted to separate the cellular proteins. And all the cellular proteins within this study were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins were referred to the information of the Pre-stained SeeBlue rainbow marker (Invitrogen, USA) loaded in parallel. The membranes were probed with the following antibodies: E-cadherin (Cell Signaling Technology, USA), Vimentin (Santa Cruz, USA), ZEB1 (Santa Cruz, USA), ZEB2 (Zymed Laboratories, Invitrogen, USA), and β-actin (Sigma, USA). The blots were detected on Kodak film developer (Fujifilm, Japan).
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4

Protein expression analysis by Western blot

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Cell lysates were lysed by RIPA buffer (Sigma-Aldrich, USA) with Complete Protease Inhibitor Cocktail (Roche, USA). Cell lysates were transferred to 1.5 mL tube and kept at −20 °C before use. SDS-PAGE was conducted to separate the cellular proteins. And all the cellular proteins within this study were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins was referred to the information of the Pre-stained SeeBlue rainbow marker (Invitrogen, USA) loaded in parallel. The membranes were probed with the following antibodies: HMGB1 (Abcam, MA, USA), RAGE (Abcam, MA, USA), NF-κB (Abcam, MA, USA) and β-actin (Sigma, USA). The blots were detected on Kodak film developer (Fujifilm, Japan). The gradation analysis of the films was performed using Image J software (National Institutes of Health, Bethesda, MD, USA).
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5

Immunoblotting Analysis of EMT Markers

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Cell lysates were lysed by RIPA buffer (Sigma-Aldrich, U.S.A.) with Complete Protease Inhibitor Cocktail (Roche, U.S.A.). Cell lysates were transferred to 1.5 ml tube and kept at −20°C before use. SDS/PAGE was conducted to separate the cellular proteins, and all the cellular proteins within the study were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins was referred to the information of the Pre-stained SeeBlue rainbow marker (Invitrogen, U.S.A.) loaded in parallel. The membranes were probed with the following antibodies: c-Ski, CD31, Vimentin, Snail, Slug, and Twist (Abcam, MA, U.S.A.), and GAPDH (Sigma, U.S.A.). The blots were detected on Kodak film developer (Fujifilm, Japan).
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6

Protein Expression Analysis by Western Blot

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Cell lysates were lysed by RIPA buffer (Sigma-Aldrich, USA) with Complete Protease Inhibitor Cocktail (Roche, USA). Cell lysates were transferred to 1.5 mL tube and kept at −20°C before use. SDS-PAGE was conducted to separate the cellular proteins. And all the cellular proteins within this study were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins was referred to the information of the Pre-stained SeeBlue rainbow marker (Invitrogen, USA) loaded in parallel. The membranes were probed with the following antibodies: β-catenin (Cat# E247, Abcam, USA), Collagen I (ab34710, Abcam), α-SMA (ab5694, Abcam), Histone H3 (ab1791, Abcam), β-actin (Cat# ACTN05 (C4), Abcam) and GAPDH (Cat# 6C5, Abcam). The blots were detected on Kodak film developer (Fujifilm, Japan).
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7

Liver Protein Separation and Detection

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Mouse liver tissues or cultured cells were lysed using RIPA buffer (Sigma-Aldrich, USA), complemented with Complete Protease Inhibitor Cocktail (Roche, USA). The lysates were transferred to 1.5 ml tube and kept at −20°C before use. SDS-PAGE was conducted to separate the cellular proteins. And all the cellular proteins within this study were separated by 5% stacking gel and 10% running gel. The molecular weight of candidate proteins was referred to the information of the prestained SeeBlue rainbow marker (Invitrogen, USA) loaded in parallel. The membranes were probed with the following antibodies: ab10296 (for TRPV1), ab5694 (for α-SMA), ab34710 (for COL1A1), and ab8226 (for β-actin). Following incubation with primary antibodies, blots were washed for four times in TBS/Tween-20 before the 1 h incubation in goat anti-rabbit horseradish peroxidase conjugate antibody at 1 : 10000 dilution in TBS/Tween-20 containing 5% skim milk. After washing extensively in TBS/Tween-20, the blots were then processed with distilled water for detection of antigen using the enhanced chemiluminescence system. The blots were visualized with the ECL-chemiluminescent kit (ECL-plus, Thermo Scientific) and detected on a Fujifilm developer (Fujifilm, Japan).
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