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11 protocols using p h3s10

1

Immunohistochemical Analysis of Liver Tissues

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Liver specimens were fixed in 10% neutral buffered formalin for 36–48 hours. Paraffin sections (4 μm thick) were prepared and performed a series of dewaxing, rehydration, antigen retrieval, and quenching of endogenous peroxidase activity. The sections were incubated with the corresponding primary antibody at 4°C overnight and anti-mouse/rabbit secondary antibody (Dako REAL EnVision Detection System, Glostrup, Denmark) for 1 hour at room temperature. Detection was developed using the 3,3′-diaminobenzidine substrate. Primary antibodies were cleaved caspase 3 (cat. 9664; Cell Signaling Technology), pH3S10 (cat. 06-570; Merck Millipore, Burlington, MA), BrdU (cat. MS-1058-P0; Thermo Fisher Scientific, Waltham, MA), and Ki67 (cat. RM-9106-S1; Thermo Fisher Scientific).
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2

Synthesis and Characterization of Anticancer Agents

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MPT0G211, tubastatin A (TBA), and SAHA were synthesized by Dr. Jing-Ping Liou’s Lab. (School of Pharmacy, College of Pharmacy, Taipei Medical University, Taiwan), and the purity are more than 98%. Doxorubicin (DOXO), cyclophosphamide (CTX), and vincristine (VCR) was obtained from Cayman Chemical (Ann Arbor, MI, USA). Antibodies against BCL-2, BCL-XL, cleaved caspase 3, caspase 8, caspase 9, acetyl-α-Tubulin, acetyl-histone 3, histone 3, HDAC6, survivin, p-ATM, p-ATR, p-CHK1, CHK1, cyclin B1, aurora B, p-PLK1, p-H3S10, p-CDC2 (Y15), and p-CDC2 (T161) were purchased from Cell signaling (Danvers, MA, USA). α-Tubulin, γ-H2AX, ATM, ATR, BAX, cytochrome c, and COX IV were from Genetex (Irvine, CA, USA). PARP and CDC2 were from Santa Cruz Biotechnology (Dallas, TX, USA).
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3

Comprehensive Protein Detection Assay

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Primary antibodies raised against the following proteins were used for Western blotting: Rad51, Mdm2, Cyclin A2, pCdk Tyr 15, and H2AX (Abcam, Cambridge, MA, USA), beta-actin (Gene Script, Piscataway, NJ, USA), pH2AX S139, PARP, Rad51 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), pH3 S10, p53 S15, total and cleaved forms of PARP, caspase-3, Chk1, Chk2, pChk1 S 345, pChk2, and Thr68 (Cell Signaling, Danvers, MA, USA) and PARP (Invitrogen, Carlsbad, CA, USA). HRP-conjugated secondary antibodies for Western blotting were purchased from Santa Cruz Biotechnology. For immunofluorescence staining, Cy3-labeled (Jackson ImmunoResearch, West Grove, PA, USA) or Alexa Fluor-488-labeled and 647-labeled secondary antibodies (Invitrogen) were used.
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4

Metformin and Salicylate Signaling Pathway

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Metformin, Salicylate and all standard chemicals were obtained from Sigma Aldrich. All antibodies (AMPK, p-AMPK T-175, ACC, p-ACC-S-79, H3 and P-H3-S10, HIF1a, p70S6k, P-p70S6k-T389, P-S6-S235/236, P-4EBP1-T37/46 and β-actin) were purchased from (Cell Signaling Technology). Biotinylated goat-anti-rabbit secondary antibody conjugated with streptavidin peroxidase and Nova Red were from Vector labs (Burlingame, CA).
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5

Western Blot Analysis of AgNPs Effect

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Cells treated with AgNPs or AgNO3 were lysed in lysis buffer and Western blotting was performed as described previously [15 (link)]. Primary antibodies against p-H3S10, γ-H2AX, phospho-ERK, ERK, phosphor-JNK, JNK, phosphor-p38, p38 (Cell Signaling Technology Inc., Danvers, MA, USA) (1:1000) were used, followed by secondary antibodies conjugated with horseradish peroxidase (Jackson Immuno Research Laboratories, West Grove, PA, USA) (1:1000).
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6

Protein Expression Analysis in Cellular Extracts

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Cell extracts (30 μg) were prepared in RIPA lysis buffer (Santa Cruz Biotechnology, Santa Cruz, CA) supplemented with a protease and phosphatase inhibitor cocktail (Roche, Indianapolis, IN) and separated on 12% SDS–PAGE gels. The expression level of the indicated proteins was assessed by probing with the following antibodies: Tfcp2l1 (OAAB09732; Aviva Systems Biology), phosphorylated Tfcp2l1 (p‐Tfcp2l1; home‐made; AbFrontier), phosphorylated threonine (p‐Thr; #9381; Cell Signaling Technology), Flag‐epitope (F3165; Sigma‐Aldrich), HA epitope (G046; Abcam), Oct‐4 (sc‐5279; Santa Cruz), Nanog (ab14959; Abcam), SOX‐2 (2683‐S; Epitomics), Klf2 (09‐820; Millipore), Klf4 (#4038; Cell Signaling Technology), cyclin A (sc‐751; Santa Cruz), cyclin B (sc‐752; Santa Cruz), cyclin D (sc‐758; Santa Cruz), cyclin E (sc‐481; Santa Cruz), CDK1 (sc‐54; Santa Cruz), histone H3 phosphorylated at serine‐10 (p‐H3S10; #9701S; Cell Signaling Technology), Hdac1 (sc‐7872; Santa Cruz), Hdac2 (sc‐7899; Santa Cruz), Hdac3 (sc‐11417; Santa Cruz), Mta1 (#5646S; Cell Signaling Technology), Mbd3 (#3896S; Cell Signaling), Ruvbl2 (#12668S; Cell Signaling Technology), Tip60 (sc‐25378; Santa Cruz), DNMAP‐1 (10411‐1‐AP; Proteintech), Trrap (#3966S; Cell Signaling Technology), pCAF (sc‐8999; Santa Cruz), and β‐actin (A5441; Sigma‐Aldrich).
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7

Antibody Sources for Cell Signaling

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Rabbit polyclonal antibodies for BubR1 were developed in the laboratory. Antibodies for Myc-Tag, p-H3S10, Cyclin B1, and β-actin were purchased from Cell Signaling Technology Inc. Mouse monoclonal antibody for Mps1 was purchased from Invitrogen. GFP antibodies were purchased from Santa Cruz Biotechnology. Mouse anti-FLAG and anti-α-Tubulin were purchased from Sigma Aldrich. Mouse anti-SUMO-1 and SUMO-2/3 antibodies were kindly provided by Dr. Michael J. Matunis (John Hopkins University). Human IgGs (CREST) against centromere proteins were purchased from Antibodies Incorporated (Davis, CA).
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8

Cell Cycle Regulation Signaling Pathway

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Cell lysates were fractionated on SDS-PAGE gel and transferred to PVDF membrane. Membrane was blocked with 5% milk and incubated with primary antibody. Antibodies used were cleaved caspase-3 (Cell Signaling Technology), cleaved PARP (Cell Signaling Technology), p21(Cell Signaling Technology), p53 (BioLegend), GAPDH (Cell Signaling Technology), β-TUBULIN (Cell Signaling Technology), pCDC2(Y15) (Genewiz), Cyclin-B (Cell Signaling Technology), pCHK1(S317) (Cell Signaling Technology), pCHK1(S345) (Cell Signaling Technology), pCHK2(T68) (Cell Signaling Technology), pH3(S10) (Cell Signaling Technology), pH3(S28) (Cell Signaling Technology).
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9

KRCC1 Silencing and Cell Proliferation

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HeLa cells growing on coverslips were transfected with scrambled (siCTL) or KRCC1 siRNA (siKRCC1). Cells were pulse labeled with 5-ethynyl-2′-deoxyuridine (EdU) for 15 min, fixed and followed by immunofluorescence of pH3-S10 (Cell Signaling Technology, 1:300) and click reaction for EdU. Statistical analysis was performed using Student’s t test (n = 3). Differences were considered significant at P < 0.05.
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10

Optimized Immunofluorescence Assay for DNA Damage Response

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Primary: CTC1 (33), STN1 (Abcam, 119263), Actinin (Santa Cruz, sc17829), a-Tubulin (Sigma, T-9026), CHK1 (Bethyl, A300-298A), CHK1 S317 (Bethyl, A304-673A), p53 (Cell Signaling, 9282), p21 (Santa Cruz, sc-6246), H3 (Cell Signaling, 9715), pH3 S10 (Cell Signaling, 9706), Rad9 (Santa Cruz, sc-74464), RPA32 (Abcam, ab16850), pRPA32 S33 (Bethyl, A300-246A), TopBP1 (Bethyl, A300-111A), ETAA1 (kindly provided by Dr. David Cortez), γH2AX (Bethyl, A300-081A) and POT1 (Abcam, ab124784).
Secondary: Thermo: anti-rabbit-HRP (32460); anti-mouse-HRP (32430); Molecular Probes: goat-antirabbit AlexaFluor 647 (A21244), goat-anti-mouse AlexaFluor 647 (A21235), goat-anti-mouse AlexaFluor 594 (A11032), goat-anti-rabbit AlexaFluor 594 (A11037). ATR inhibitor: VE-821 5 µM for 24 h (Selleckchem, S8007).
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