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Rr037q

Manufactured by Takara Bio
Sourced in Japan

The RR037Q is a laboratory equipment product from Takara Bio. It is a specialized device designed for scientific applications. The core function of the RR037Q is to perform a specific set of tasks within a laboratory environment. A detailed description of the product's intended use or capabilities is not available at this time.

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4 protocols using rr037q

1

RNA Extraction and Real-Time qPCR Analysis

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About 5 × 108 cells in each of four groups were collected, 500 μl TRIzol (R0016, Beyotime) lysate protein nucleic acid complex was added, and 100 μl chloroform was mixed to extract RNA. After centrifugation at 12000 RPM, 4°C, for 10 min, the upper colorless aqueous phase was collected, 200 μl isopropanol was added to precipitate RNA, and 75% of the cells were washed. The extracted RNA was retrotranscribed into a cDNA template with a reverse transcription reagent (RR037Q, Takara). Then, a real-time fluorescent quantitative polymerase chain reaction (Applied Biosystems, ABI 7500) was conducted with TB Green qPCR reagent (RR82LR, Takara). The Ct value of genes to be examined was calibrated using the Ct value of the internal reference gene GAPDH, and the amplification multiple of genes relative to the internal reference genes was calculated according to the 2−∆∆Ct formula. Amplification conditions: the first stage was kept at 95°C for 30 s; the second stage was 95°C for 5 s and 60°C for 30 s, for 40 cycles; and the third stage was maintained at 95°C for 15 s, 60°C for 60 s, and 95°C for 15 s.
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2

RNA Extraction and Quantitative PCR

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The TRIzol method (R0016, Beyotime, China) was applied to extract RNA. For reverse transcription of RNA into cDNA (RR037Q, TAKARA, Japan), the reaction system was as follows: a final volume (10 μl) reaction system containing, 5× PrimeScript RT Master Mix (2 μl), total RNA (2 μl), and RNase-free ddH2O (6 μl). The reaction conditions were set as follows: 37°C for 15 min, 85°C for 5 s, and 4°C for 5 min. The reaction volume for real-time fluorescent quantitative PCR (RR086A, TAKARA, Japan) was 25 μl comprising 2× SYBR Premix (12.5 μl), forward and reverse primers (1 μl each), cDNA (2 μl), and ddH2O (8.5 μl). The reaction conditions were as follows: 95°C for 30 s, 95°C for 5 s, 60°C for 30 s (40 cycles). Each sample had four replicate wells, with tubulin as the internal control. The 2−ΔΔt method was used to calculate the relative expression levels. The reference primer sequences were, forward primer: CGG TTC ATG GAA ACC TCA CT, and reverse primer CAT GCT GGC TCC GGT ATA AT.
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3

qPCR Analysis of Brain Samples after ICH

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Brain samples were collected on day 7 after ICH. Total RNA was prepared from brain perihematomal tissue or cultured cells using a total RNA Extractor (Trizol) kit (B511311, Sangon Technology Co., Ltd., China) following the manufacturer’s instructions. Total RNA was reverse transcribed with reverse transcriptase (RR037Q, Takara, Japan). qPCR was performed with target-specific primers and SYBR Green reagent (RR820Q, Takara Co., Ltd., Japan). Quantitative polymerase chain reaction (qPCR) was performed in 20 μL with cDNA for 40 amplification cycles in a LightCycler 96 System (Roche, IN, USA). The 2–∆∆CT method (Diao et al., 2022) was used to measure mRNA levels and GAPDH mRNA was used as a reference for normalization. Replications of at least three independent tissue samples or cell cultures were used. Table 1 shows the primer sequences used in this study.
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4

ChIP-qPCR for Notch-3/4 Regulation

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The EZ ChIP chromatin immunoprecipitation kit (#17-371, Sigma-Aldrich) was used according to the manufacturer’s protocol. Briefly, the cells were treated with 1% formaldehyde to cross-link proteins to DNA. The cells were lysed with protease inhibitors, sonicated to shear DNA into fragments and incubated with antibodies against KLF10, RNA polymerase III or anti-rabbit IgG overnight. The purified DNA and input genomic DNA were analyzed using real-time PCR. The primers used are as follow: promoter PCR sequences for Notch-3: Forward, TCACAGAGGAAGTGGGTTGC; Reverse, CAGCCTCAGACCTCAGACA. Notch-4: Forward, CCCCAAAGTTGTCCTGGGTT; Reverse, TCCTTGGGATGCAGGGAATG. The results were quantitated by Quantstudio 3 (Applied biosystems).
For RT-PCR, a reverse transcription kit (RR037Q, Takara Bio, San Jose, CA) and KAPA SYBR®FAST Mix (KK4600, KAPA Biosystems) were used as recommended by the manufacturer. The primers used were listed in Additional file 6: Table S1.
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