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Light cycler 2

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The LightCycler 2.0 is a real-time PCR instrument designed for quantitative nucleic acid analysis. It features a high-performance optical system, rapid thermal cycling, and software for data analysis. The LightCycler 2.0 is capable of performing real-time PCR experiments with various fluorescent detection formats.

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2 protocols using light cycler 2

1

Quantitative Real-Time PCR for Gene Expression

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To measure the mRNA levels of target genes, total RNA was isolated from cells by Qiagen lysis solution (Qiagen, Maryland, USA) and transcribed into cDNA by Go Script reverse transcription process (Promega) according to the manufacturer's instructions and as described previously67 (link). Quantitative real time-PCR was then performed using a Light Cycler 2.0 (Mannheim, Germany) using absolute QPCR SYBR green capillary mix system (Thermo Scientific, UK) at 95 °C for 15 min, with successive 40 cycles of 95 °C for 15 s, 56 °C for 30 s, and 72 °C for 45 s. The mRNA level of target gene was normalized to the value of glyceraldehyde-3-phosphate dehydrogenase (GAPDH). The sequences of the primers used for the PCR amplification are listed in Table 1.

Sequences of primers used in quantitative PCR.

Target genePrimerNucleotide sequence
p62F5′-GCTCAGGAGGAGACGATGAC
R3′- AGAAACCCAAGGACAGCATC
TNF-αF5′-CCCTCACACTCAGATCATCTTCT-3′
R5′-GCTACGACGTGGGCTACAG-3′
GAPDHF5′-ACCACAGTCCATGCCATCAC-3′
R5′-TCCACCACCCTGTTGCTGTA-3′
IL-1βF5′-GCCTCGTGCTGTCGGACCCATAT
R3′-TCCTTTGAGGCCCAAGGCCACA
IL-6F5′-ACAACCACGGCCTTCCCTACTT
R3′-CACGATTTCCCAGAGAACATGTG
IFN-βF5′-AACTCCACCAGCAGACAGTG
R3′-TGAGGACATCTCCCACGTCA
Nrf2F5′-CTCGCTGGAAAAAGAAGTG
R3′-CCGTCCAGGAGTTCAGAGA
p21F5′-AATACCGTGGGTGTCAAAGC
R3′-GTGTGAGGACTCGGGACAAT
T-CadF5′-TGCTGAAGACATGGCAGAAC
R3′-GGCTGACTCTGGTTCTCTGG
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2

Quantitative Real-time PCR Measurement

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For the measurement of mRNA levels of target genes, total RNAs were isolated by Qiagen lysis solution (Qiagen, Maryland, USA) according to the manufacturer's instruction. Isolated total RNA was reverse transcribed into cDNA using Go Script reverse transcription system (Promega). Quantitative Real time-PCR was then performed using Light Cycler 2.0 (Mannheim, Germany) with the use of absolute QPCR SYBR green capillary mix AB gene system (Thermoscientific, UK) at 95°C for 15 s, 56°C for 30 s, and 72°C for 45 s. The amount of target mRNA was analyzed via comparative threshold (Ct) method after normalizing target mRNA Ct values to that for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (ΔCt). The primer sequences used for amplification of target genes are listed in Table 1.
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