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Viral rna dna mini kit

Manufactured by Thermo Fisher Scientific

The Viral RNA/DNA Mini Kit is a nucleic acid extraction kit designed to isolate and purify viral RNA or DNA from various sample types. It utilizes a silica-based membrane technology to efficiently capture viral nucleic acids, which can then be eluted for use in downstream applications such as PCR or sequencing.

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3 protocols using viral rna dna mini kit

1

Viral Disease Detection in Field Plants

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Field plants colonized by whiteflies showing typical viral disease symptoms such as mosaic leaf pattern, crinkled leaves, yellowed leaves and plant stunting were collected for further molecular analysis. Nucleic acid extractions were carried out using the Viral RNA/DNA Mini Kit by Invitrogen. Subsequently, different PCR’s were carried out for the detection of the main viral diseases for each crop in Brazil. For soybean, the detection of Cowpea mild mottle virus (CpMMV)53 was carried out, tomato plants were analyzed for the presence of Tomato severe rugose virus (ToSRV)79 (link) and Tomato chlorosis virus (ToCV)80 (link). Ornamental plants were analyzed for the presence of Torradovirus81 (link). Primers details and PCR conditions are available in Supplementary Table 3.
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2

Quantifying Viral Load via qPCR

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Total RNA was extracted from lungs of infected animals, using viral RNA/DNA Mini Kit (PureLink ® -Invitrogen), following the manufacturer's instructions. cDNA was synthesized with random primers using Sensiscript ® Reverse Transcription kit (QIAGEN ® ). The quality of cDNA for each sample and Quantitative real time PCR (qPCR) was performed as previously described (Freitas et al., 2016) . For the standard curve, ten-fold serial dilution of 6 × 10 7 copies of a plasmid with RSV F protein sequence were added to the same plate of qPCR in duplicate. The results were used for further quantification of viral load.
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3

Quantifying RSV Infection in BMDC

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Total RNA was extracted from RSV infected BMDC using Viral RNA/DNA Mini Kit (PureLink® -Invitrogen) following the manufacturer's instructions. cDNA was synthetized with random primers using Sensiscript® Reverse Transcription kit (QIAGEN®). The quality of the cDNA for each sample was tested by amplification of β-actin endogenous gene using specific primers and probes from TaqMan Assay (Applied Biosystems®). Samples that did not amplify β-actin gene were excluded. Real time PCR was performed to RSV protein F gene amplification using specific primers and probes (forward 5′-AACAGATGTAAGCAGCTCCGTTATC-3′, reverse 5′-CGATTTTTATTGGATGCTGTACATTT-3′ and probe 5′-FAM/ TGCCATAGCATG ACACAATGGCTCCT-TAMRA/-3′). Data were analyzed by cycle threshold (CT). Delta CT value was calculated from the difference of the CT from the RSV protein F gene to the CT of β-actin gene. Fold-change in mRNA abundance was calculated using 2 (-ΔΔCT) method (Schmittgen and Livak, 2008) (link).
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