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2 protocols using mmp 13

1

Histological Analysis of Intervertebral Disc Degeneration

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IVD specimens were fixed, decalcified, dehydrated, paraffin-embedded, and processed into serial 4 μm coronal sections. After deparaffinization and hydration, hematoxylin and eosin (H&E), Safranin O/Fast Green (SO/FG) and Masson staining were performed. For immunohistochemistry (IHC), slices were placed in citric acid solution (50mM) and incubated in a water bath at 60°C for 16 h to extract antigen, then incubated in 30% hydrogen peroxide solution for 10 minutes and blocked with 10% goat serum at 37°C for 1 hour. The sections were incubated in antibodies against MMP-13, OCN, NCOA4, LGR5 (purchased from ABclonal), Collagen X, p53, p16IKN4A, Ferritin, β-catenin (purchased from Abcam), and Col2a1 (purchased from Millipore) at 4°C overnight, followed by incubation in secondary antibody (purchased from Abcam) for 1 hour at room temperature, DAB chromogenesis and hematoxylin staining. For IF staining, the sections were incubated with a secondary antibody (purchased from Abcam) followed by staining with DAPI. In the quantitative analysis, the CEP height was calculated by using the mean value of the CEP height at 25%, 50%, and 75% of the coronal position of the IVD. The degree of IVDD was scored according to the modified scoring method in the previous literature.47 (link) IHC and IF staining were performed to compare protein expression by calculating the positive cell ratio.
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2

Macrophage and Chondrocyte Protein Analysis

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The total proteins from different macrophages and chondrocytes were extracted with the RIPA lysis buffer (MCE, NJ, USA) containing a mixture of phosphatase and protease inhibitors. Then, the proteins were separated with 8–12% SDS-PAGE (Febio science, Hangzhou, China) and transferred to the polyvinylidene fluoride membranes (Merk Millipore, Darmstadt, Germany). The membranes were blocked with 5%BSA and then incubated with the primary antibodies overnight. The membranes were washed next day with PBST and then incubated with the HRP-conjugated secondary antibodies (Beyotime, Shanghai, China) for 90 min. These results on the membranes were captured and documented by Molecular Imager (Bio-Rad, CA, USA).
The primary antibodies used include those against IL-1β (R&D Systems, MN, USA), NLRP3 (Adipogen, CA, USA), ASC (Adipogen), Caspase-1 (Adipogen), P-jak2 (Abcam, MA, USA), P-Stat3 (Abcam), P-bad (Cell Signaling Technology, MA, USA), Cleaved Caspase-3 (Cell Signaling Technology), Jak2 (ABclonal, Wuhan, China), Stat3 (ABclonal), Bad (ABclonal), Clic1 (ABclonal), Clic4 (ABclonal), ADAMTS5 (ABclonal), MMP13 (ABclonal), Bax (HUABIO, Hangzhou, China), Bcl-2 (HUABIO), Clic5 (HUABIO), PIM-1 (HUABIO), Collagen II (ProteinTech, Wuhan, China), Aggrecan (ProteinTech), β-actin (ProteinTech), GADPH (ProteinTech).
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