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3 protocols using thunderbird probe

1

Quantifying CD166 Gene Expression

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Total RNA was abstracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Complementary DNA (cDNA) was amplified using ReverTra Ace qPCR RT Kit (Toyobo, Osaka, Japan). The protocol was conducted with the following cycling parameters: at 37°C for 15 mins, and at 98°C for 5 mins for 40 cycles. All quantitative reverse transcription polymerase chain reaction (RT-qPCR) examinations were performed using 96-microwell plates in a 7300 Real-Time PCR System (Applied Biosystems, Foster city, CA, USA). The RT-qPCR amplification was conducted in a 20 μl final reaction volume using THUNDERBIRD Probe and SYBR qPCR Mix (Toyobo, Osaka, Japan) according to the manufacturer’s instructions. Quantifications were normalized by taking β-actin as an internal reference and were calculated by using the 2ΔΔCt method. Primer sequences were as follows:
CD166 forward, 5’- ACTTGACGTACCTCAGAATCTCA −3’;
and reverse, 5’- CATCGTCGTACTGCACACTTT −3’;
β-actin forward, 5’-AGAGCTACGAGCTGCCTGAC-3’;
and reverse, 5’-AGCACTGTGTTGGCGTACAG-3’.
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2

Cell Culture and RNA Extraction Protocol

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A431 (epidermoid carcinoma), G361 (malignant melanoma), NP-2 (glioma), and HaCaT (epidermal keratinocytes) cells were cultured in DMEM containing 10% fetal bovine serum, 100 IU/ml penicillin G and 100 μg/ml streptomycin at 37 °C in a 5% CO2 atmosphere. Cellular RNA was extracted from each cell line using an RNeasy mini kit (Qiagen). Complementary DNA was prepared with GoScript Reverse Transcriptase (Promega) using random primers. qPCR was performed by using THUNDERBIRD Probe and SYBR qPCR Mix (Toyobo), as described above. The cells were treated with 100 μM 5-azacytidine (5AzaC) (Cayman Chemical) or 30 ng/ml poly(I:C) (InvivoGen) for 12 and 24 h, and RNA was then extracted.
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3

Edible Bird Nest Powder Immunomodulatory Effects

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A raw EBN sample (rEBN) was purchased from Surat-Thani, Thailand. Aiko Edible Bird Nest Pattani Part., Ltd. (Thailand) provided the processed EBN powder (pEBN). Thermo Fisher Scientific K.K. (Japan) supplied the RPMI 1640 medium and Dulbecco's Modified Eagle Medium (DMEM). FITC anti-mouse MHC-II, FITC anti-mouse CD80, and FITC anti-mouse CD86 were purchased from eBioscience, Inc. (USA). FITC anti-mouse CD3ε antibody, PE anti-mouse CD19 antibody, anti-mouse CD16/32 antibody, and recombinant mouse IL-2 were purchased from BioLegend, Inc. (U.S.A.). Falcon® 70 μm Cell Strainer was purchased from Corning, Inc. (USA). Fetal bovine serum (FBS), l-Glutamine, Penicillin-Streptomycin, and β-mercaptoethanol were purchased from Nacalai Tesque, Inc. (Japan). The filter paper was purchased from ADVANTEC Co., Ltd., Japan). THUNDERBIRD™ - Probe and SYBR® were purchased from Toyobo Co., Ltd., JAPAN.
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