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82 protocols using espree

1

MRI Data Harmonization for Multicenter Studies

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Considering that our MRI images were obtained using four different scanners, which might have caused inconsistency in acquisition and reconstruction parameters, a harmonization method named ComBat [[26] (link), [27] , [28] ,30 (link),31 ] was used to correct the scanner effect based on the observed feature values. The harmonization method of ComBat was used to correct the scanner effect based on the observed feature values. We divided our data into four batches according to the different types of MRI scanners, one batch obtained using Signa EXCITE at SYSUCC (Signa CV/i; General Electric Healthcare, Chalfont St. Giles, United Kingdom), one batch obtained using Signa HDx at SYSUCC (Signa CV/i; General Electric Healthcare, Chalfont St. Giles, United Kingdom), one batch obtained using SIEMENS Espree at SYSUCC (Siemens Healthcare, Erlangen, Germany), and one batch obtained using SIEMENS Novus15 at WZRCH (Siemens Healthcare, Erlangen, Germany). The harmonization methods have been described in detail in Supplementary Methods.
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2

Intraoperative MRI-guided Pituitary Adenoma Resection

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An intraoperative 1.5 T MRI scanner (Siemens Espree, Siemens AG, Erlangen, Germany) has been available at our department as a one-room solution since October 2008. The analysis of residual tumor as detected by iMRI was performed on thin slice (2 mm) high-resolution coronal and sagittal T2 and with gadolinium-enhanced T1 images. The use of iMRI led to an increase in the duration of surgery by approximately 45 min. At our department, all eligible cases of pituitary adenomas were scheduled for iMRI-assisted resection. In a minority of cases, iMRI was not performed due to unexpected circumstances such as, for instance, technical issues.
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3

Cardiac MRI Protocol for LV Assessment

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CMR images were obtained with 1.5T MR Siemens Espree scanner (Siemens Medical Solutions) at visit 3 in 1749 participants with available covariates of interest. Cine and tagged imaging were performed to assess LV mass, volumes, and deformation parameters. LV mass was indexed to body surface area measured at visit 3.14
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4

Multimodal MRI Acquisition Protocol

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A T1‐weighted magnetization‐prepared gradient echo sequence (MPRAGE) acquisition was performed using a 1.5T MRI SIEMENS Espree scanner (Siemens) including the following parameters: TR = 2,400 ms, TE = 3.65 ms, NEX = 1, field of view (FOV) = 240 mm, slice thickness = 1.2 mm (no gap between slices), slices = 160, flip angle = 8°, matrix = 192 × 192 pixels, voxel size = 1.3 × 1.3 × 1.2 mm. The DTI sequence was synchronized to the cardiac gating and consisted of one T2‐weighted image without diffusion gradient (b = 0 s/mm2) plus diffusion‐weighted images (DWI) acquired along 64 noncollinear directions (b = 1,000 s/mm2). DWI was based on an echo‐planar image (EPI) acquisition with the following parameters: TR = 8,000 ms, TE = 110 ms, NEX = 2, FOV = 240 mm, slice thickness = 2.7 mm (no gap between slices), 50 slices, matrix = 120 × 120 pixels. The two sequences were acquired in 25 min. Individual image inspection was performed by an expert neuroradiologist aiming to identify possible silent brain lesions and artifacts that could interfere with image processing and analysis.
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5

MRI-Compatible Non-Invasive Ventilation Study

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Without any previous ventilator or MRI training or experience, on the day of the experiment each subject was allowed sufficient time (~5 minutes) to become comfortable breathing spontaneously via a facemask and connected to an MR compatible non-invasive ventilator (MR1 Hamilton Medical AG, Bonaduz, Switzerland). Subjects then acclimatised to lying on an MR couch (Siemens Espree, Siemens AG, Erlangen, Germany) whilst breathing spontaneously with the ventilator using air/oxygen mix (FiO 2 <0.4). Baseline end tidal partial pressure of carbon dioxide (P ET CO 2 ) levels, non-invasive pulse oximetry and heart rate were measured at the start and monitored throughout, with pre-defined limits set to ensure subject safety during the procedure [7] . The ventilator was then switched to take over their breathing non-invasively with positive pressure, controlling the rate and level of breathing, by causing all the usual and normal cycles of inflation and deflation. Two arbitrary ventilation rates of 20 and 25 breaths per minute were set, whilst simultaneously reducing inflation volume to match or exceed their metabolic rate such that P ET CO 2 >2.7kPa, sPO 2 >94% and heartrate <100bpm [5] [6] [7] .
Participant experience of the procedure was assessed through a non-validated questionnaire, using 5 questions each scoring between 1 and 5 points; maximum comfort / experience scoring 5 points.
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6

Cardiac MRI Imaging Protocol for LV Function

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Cardiac magnetic resonance imaging was completed on visit 3 using a 1.5-T magnetic resonance imaging system (Siemens Espree; Siemens, Erlangen, Germany; 70 cm bore, advanced cardiac package, TIM Matrix surface coil) and this protocol was based on the previously described Multiethnic Study of Atherosclerosis cardiac magnetic resonance protocol. 18 (link) Cine images with steady-state free precession were gated by ECG to assess LV function and mass. Short axis volumetric coverage was used to obtain LV volume and mass. Papillary muscles were excluded from LV mass but included in LV volumes. Analysis of cardiac structure and function data was performed using Cardiac Image Modeler software (University of Auckland, New Zealand). Tagged images of the basal, mid, and apical LV walls were performed using a cine radiofrequency grid-tagging sequence (field of view 400 mm, slice thickness 8 mm, 192×256 matrix, repetition time 60 ms, echo time 4 s, and fractional anisotropy of 12° [Siemens sequence: Tl2d1r5]). A harmonic phase algorithm (Diagnosoft, Morrisville, NC) was used to complete the myocardial tagging analysis. Finally, global strain was computed by using the average peak circumferential strain of the apical, mid, and basal walls of the LV.
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7

4D Flow MRI for Cardiac Blood Flow

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All MRI examinations were performed on 1.5T and 3T MRI systems (Espree, Aera, Avanto, and Skyra, Siemens, Germany). All patients underwent cardiac MRI including retrospectively ECG gated time-resolved (CINE) balanced steady-state free precession (SSFP) imaging in four-chamber, two-chamber, and short axis orientation of the left ventricle to evaluate left ventricular ejection fraction (LVEF). In addition, prospectively ECG gated time-resolved 3D phase-contrast (PC) MRI with three-directional velocity encoding (4D flow MRI) was employed to measure in-vivo 3D blood flow velocities in the LA22 (link). 4D flow MRI data were acquired during free breathing using navigator gating of the diaphragm motion. Further 4D flow MRI pulse sequence parameters were as follows: flip angle=7–15°, spatial resolution=2.5–3.0mm × 2.5–3.0mm × 3.0–4.0mm, temporal resolution=38–42ms, imaging acceleration (GRAPPA technique) with a reduction factor of R=2, total acquisition time=10–20min depending on heart rate and navigator efficiency, velocity sensitivity=100–150cm/s.
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8

Ultra-high-field MRI Comparison

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Ultra-high-field examinations were acquired on a 7 Tesla whole-body MRI system (Magnetom 7T, Siemens Healthcare, Erlangen, Germany) utilizing a 32-channel Tx/Rx head coil (Nova Medical, Wilmington, USA). The scanner is equipped with a gradient system of 45 mT/m maximum amplitude and a slew rate of 200 mT/m/ms.
Concomitant 1.5 Tesla examinations were acquired on a whole-body MRI system (Espree, Siemens Healthcare) equipped with a 12-channel Rx head coil (Siemens Healthcare, Erlangen, Germany). The scanner is equipped with a gradient system of 33 mT/m maximum amplitude and a slew rate of 200 mT/m/ms.
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9

4D-flow MRI of Thoracic Aorta

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All subjects underwent 4D-flow MRI with full volumetric coverage of the thoracic aorta (sagittal-oblique 3D volume) using either 1.5T (N = 1053; Aera, Avanto, or Espree; Siemens Healthineers, Erlangen, Germany) or 3T MRI systems (N = 140; Skyra; Siemens Healthineers). The 4D-flow MRI pulse sequence parameters were as follows: spatial resolution = 1.2–3.1 × 1.2–3.1 × 1.2–5.0 mm3, temporal resolution = 32.8–44.8 ms, velocity sensitivity (venc) = 80–500 cm/s, FOV = 124–406 × 180–500 × 38–176 mm3, TE = 2.1–3.0 ms, TR = 4.1–5.7 ms, and flip angle = 7°−25°. Data for all subjects were acquired during free-breathing with respiratory navigator gating and either prospective (N = 1172) or retrospective (N = 21) electrocardiographic gating. For N = 1064 subjects, a contrast agent (either Gadavist, Magavist, Multihance, dotarem, or Ablavar [Bayer Healthcare, Berlin, Germany] or Feraheme [Amag Pharmaceuticals, Waltham, MA]) was administered before the 4D-flow scan acquisition as standard-of-care protocol.
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10

4D Flow MRI for Thoracic Aorta Evaluation

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4D flow MRI measurements were carried out on 1.5 and 3T scanners (Espree, Avanto, Skyra, Aera, Siemens, Erlangen, Germany). All patients underwent a standard-of-care thoracic cardiovascular MRI including ECG gated time-resolved (CINE) cardiac MRI for the evaluation of cardiac function and valve morphology as well as contrast enhanced MR angiography for the quantification of aortic dimensions. For valve imaging, a 2D imaging plane was carefully positioned orthogonal to the aortic root at the level of the aortic valve. In addition, 4D flow MRI of the thoracic aorta was performed in a sagittal oblique volume using prospective ECG gating and free-breathing with a respiratory navigator placed on the lung-liver interface (28 (link)). 4D flow pulse sequence parameters were as follows: spatial resolution = 1.7-3.6 × 1.8–2.4 × 2.2–3.0mm3, temporal resolution = 37–42ms (14-25 cardiac time frames); TE/TR/flip angle = 2.2-2.8ms / 4.6-5.3ms / 7-15 °, field of view = 144–380 × 120–285 × 67–116mm3, velocity sensitivity = 150cm/s, 150–250cm/s, 150–450cm/s for the healthy controls, patients with aortic dilation and patients with aortic stenosis, respectively (manually specified by the technologist to minimize velocity aliasing).
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