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Orca er digital camera

Manufactured by Hamamatsu Photonics
Sourced in Japan, Germany, United Kingdom, United States, France

The ORCA-ER digital camera is a high-performance, cooled CCD camera designed for scientific imaging applications. It features a large, high-resolution CCD sensor with low-noise characteristics, enabling high-quality image capture. The camera offers a range of image capture modes and connectivity options to support various experimental setups.

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92 protocols using orca er digital camera

1

Gonad Dissection and Immunostaining

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Gonads were dissected on glass slide (Thermo Fisher Scientific, 1256820) in M9 buffer, mounted in 2% paraformaldehyde (Electron Microscopy Science, Nm15710) in egg buffer (25mM HEPES pH 7.5, 118mM NaCl, 48mM KCl, 2 mM CaCl2, 2mM MgCl2), and directly imaged. Epi-fluorescence and differential interference contrast (DIC) microscopy were performed using an Axio Imager M2 Microscope (Zeiss). Images were captured with an ORCA-ER digital camera (Hamamatsu) and processed using Axiovision software (Zeiss).
Immunostaining of gonads was performed essentially as described (Kim et al., parallel) .
The primary antibodies (1:100) used were anti-acetyl-histone H3K9 antibody (Abcam, ab12179), anti-di-methyl-histone H3K9 antibody (Abcam, ab1220), and anti-tri-methyl histone H3K4 (Millipore, . The secondary antibodies (1:1000) used were goat antimouse IgG (H+L) Alexa Fluor 594 (Thermo Fisher Scientific, A11005), goat anti-mouse IgG (H+L) Alexa Fluor 488 (Thermo Fisher Scientific, A11001), and goat anti-rabbit IgG(H+L) Alexa Fluor 568 (Thermo Fisher Scientific, A11011), respectively. Epifluorescence and differential interference contrast (DIC) microscopy were performed using an Axio Imager M2 Microscope (Zeiss). Images were captured with an ORCA-ER digital camera (Hamamatsu) and processed using Axiovision software (Zeiss).
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2

Calcium Signaling in iPSC-derived Neurons

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Three-week-old neurons derived from BD and normal iPSCs were previously infected with a synapsin promoter-driven lentiviral vector expressing DsRed (Syn::DsRed). Cell cultures were washed twice with sterile Krebs HEPES Buffer and incubated with 3 μm Fluo 4-AM (Molecular Probes) in Krebs HEPES Buffer for 40 min at room temperature. Excess dye was removed by washing twice with Krebs HEPES Buffer, and cells were incubated for an additional 20 min to equilibrate the intracellular dye concentration and allow de-esterification. Time-lapse image sequences (×100 magnification) of 3,000 frames were acquired at 28 Hz with a region of 336 pixels × 256 pixels using a Hamamatsu ORCA-ER digital camera (Hamamatsu Photonics) with a 488 nm (FITC (fluorescein isothiocyanate)) filter on an Olympus IX81 inverted fluorescence confocal microscope (Olympus Optical). To assess changes in calcium signalling in response to perturbation of neuronal activity, tetrodotoxin (1 μm) was applied by bath application. Images were acquired with MetaMorph 7.7 software (MDS Analytical Technologies). Images were subsequently processed using ImageJ software and custom written routines in Matlab 7.2 software (Mathworks).
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3

Immunofluorescence Staining Protocol

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Cells were cultured in Millicell EZ 8-well chamber slides (Merck Millipore, Watford, UK). To fix the cells, the culture medium was removed and the cells were washed with PBS and then fixed in 100% ice-cold ethanol. To proceed with immunofluorescence staining, the cells were washed 3 times in PBS and then permeabilised using 0.1% Triton X-100 (Sigma-Aldrich, Dorset, UK). Blocking buffer (5–10% donkey serum (D9663, Sigma-Aldrich, Dorset, UK)) in PBS was added to each well. The slide was left for 3 h at room temperature in a blocking buffer. The chamber slide was then incubated with primary antibodies for an hour on the bench or at 4 °C overnight. Secondary antibodies were (1:500) with the addition of DAPI (1:100), and each primary antibody was incubated with the corresponding secondary for a further hour. Following three washes in PBS, the slides were mounted in FluorSave™ (Calbiochem, Nottingham, UK) and allowed to dry before being visualised using an Olympus BX51 microscope with a Hamamatsu Orca ER digital camera at ×40. Images were analysed using ImageJ.
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4

Immunohistochemistry of Pancreatic Tissues

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Paraffin sections for pancreatic head and tail were prepared as previously described [30 (link),31 (link)]. The entire pancreas was sectioned every 200 μm, generating 8-16 sections for both head and tail pancreas. Primary antisera included guinea pig anti-insulin (catalogue number A0564, Dako, Carpinteria, CA, USA) and mouse anti-human Ki67 (catalogue number 550609; BD Biosciences, San Jose, CA, USA), followed by secondary antisera conjugated to Cy3 or Cy5 (catalogue numbers 706-166-148 and 715-605-151; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) and DAPI (Molecular Probes, Eugene, OR, USA). EdU was detected by Click-iT EDU Alexa Fluor 647 Imaging kit (Invitrogen, Carlsbad, CA, USA). Images were acquired using Zeiss AxioImager (Carl Zeiss MicroImaging, Thornwood, NY, USA) with Orca-ER digital camera (Hamamatsu, Middlesex, NJ, USA). Slides were imaged to quantify beta cell morphometry as previously described [30 (link)], using Volocity 6.1.1 software (PerkinElmer, Waltham, MA, USA).
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5

Quantitative Analysis of Motoneurons and Axons

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For cresyl violet motoneuron counts, 5 to 6 serial 40 μm thick sections
from lumbar 4 (L4) spinal cord segments separated by 800μm were stained as
described above. Spinal cord sections of 4 or 5 animals per group were examined. Images of
each ventral horn region were captured with an Axioscop light microscope equipped with an
Olympus camera DP71 and motoneurons were manually counted by a blinded operator.
Motoneurons were identified based on their location in the ventral horn, morphology as
well as presence of Nissl-positive staining in the cytoplasm. For immunostained
motoneurons counting, 10 to 12 serial sections stained as described above were used and
captured with an Olympus BX61 fluorescence microscope equipped with a Hamamatsu ORCA-ER
digital camera. Images were processed with the free NIH imageJ software.
For axonal count from Toluidine stain section, the whole ventral root area was
captured with a Zeiss Axioscop light microscope equipped with an Olympus camera DP71 and
images analyzed with the ImageJ software. GFP-positive axon counts were performed on
double labeled ventral and dorsal roots sections as described above. Three representative
fields were captured at 20x with a Zeiss laser-scanning confocal microscope and the total
number of axons and GFP-positive axons analyzed with the ImageJ software.
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6

Mitochondrial Membrane Potential Assessment

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For determination of the loss of mitochondrial membrane potential, cells were stained with the fluorescent dye tetramethylrhodamine-6-maleimide (TMRM+; Sigma-Aldrich). TMRM+ is transported into mitochondria with sufficient high mitochondrial membrane potential. Cells were grown and treated in 24-well plates; they were harvested by trypsinization and stained by TMRM+ (1 µM, 20 min, 37 °C). After 2× washing with PBS, cells were measured by flow cytometry (FL2H).
For microscopic visualization of MMP as well as of morphological changes in course of apoptosis, SCC cells were seeded into 6-well plates (2 × 105 cells/2 mL) and treated for 24 h. Thereafter, cells were incubated for 30 min with 2 µg/mL JC-1 (5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethyl-benzimidazolylcarbocyanin iodide; Life Technologies) and with 0.2 µg/mL Hoechst-33342 (Sigma-Aldrich Chemie, Taufkirchen, Germany). After staining, microscopy images were taken with an Axiovert 200 inverse fluorescence microscope (Carl Zeiss, Jena, Germany) equipped with appropriate fluorescence filter sets and a Hamamatsu ORCA-ER digital camera.
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7

Fluorescent Tagging of Aspergillus fumigatus RtfA

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Aspergillus fumigatus ΔKU80 was transformed with an rtfA::gfp::pyrG fusion PCR cassette generated as previously described by Szewczyk [30 (link)]. Briefly, rtfA was amplified from CEA10 with primers AfumRM3_Oef and afumrm3r, excluding the stop codon. A gfp::pyrG fragment was PCR-amplified from plasmid p1439 using primers afumrm3gfpf and afumrm3gfpr (S1 Table). The rtfA 3’UTR was amplified from CEA10 with primers AfumRM3_3f and AfumRM3_3r. The three fragments were fused using primers afumrm3f and AfumRM33_Nested. The GFP-tagged transformant strain (TRRM6, S2 Table) was confirmed by PCR using primers AfumRM3_oef and AfumRM33_Nested. Conidia from TRRM6 were inoculated on the surface of coverslips immersed in Watch minimal medium [32 (link)]. The cultures were incubated for 16 h at 37°C. Localization of RtfA was visualized by observing green fluorescence (GF) using a Nikon Eclipe E600 microscope with a 60x immersion objective, Nomarski optics, and fluorochromes for green fluorescence detection (excitation, 470; emission, 525). GF images as well as differential interference contrast (DIC) and DAPI (4′,6-diamidino-2-phenylindole) images to indicate nuclear localization were obtained. Micrographs were captured with a Hamamatsu ORCA-ER digital camera processed by Hamamatsu HC Image software.
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8

Comparative In vitro Growth of Toxoplasma Strains

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In vitro growth assessment of the ME49 Δleac strain was performed by comparing the invasion rate and plaque area formation with those from the parental ME49 Δhpt strain. Briefly, HFFs were plated in 24-well plates and infected with 200 parasites of each strain. After 7 days, the number of plaques were counted for 4 wells per strain, and the percentage of invading parasites calculated. Furthermore, plaque areas were captured and measured using a Nikon TE2000 inverted microscope equipped with Hamamatsu ORCA-ER digital camera and NIS Elements imaging software, respectively, for at least 25 plaques from 3 different wells for each strain. All experiments were performed in triplicate.
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9

Quantifying Activated MuSCs in Transplanted Muscle

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We collected the culture progeny of MuSCs from aged Myf5nLacZ/+/Luciferase double-transgenic mice23 (link),43 (link) by incubation with 0.1% trypsin in PBS for 2 min at 37 °C and transplanted them into tibialis anterior muscles of hindlimb-irradiated NOD/SCID mice. One month after transplant, we injected notexin to damage recipient muscles and activate MuSCs in vivo. Four days later, we collected, fixed, and cryosectioned recipient muscles, as described above. We performed immunohistological analysis of transverse tissue sections to detect β-galactosidase+ cells (indicating a donor-derived cell expressing Myf5, a marker of MuSC activation) in the satellite cell position within the myofiber basal lamina, as defined by laminin staining. We stained sections with anti-Laminin (Millipore, clone A5, catalog # 05-206, 1:250) and anti-β-galactosidase (Invitrogen, catalog # A11132, 1:100) primary antibodies and then with appropriate secondary antibodies (Invitrogen). We counter-stained nuclei with Hoechst 33342 (Invitrogen). We acquired images with an AxioPlan2 epi-fluorescent microscope (Carl Zeiss) with Plan NeoFluar 10×/0.30NA or 20×/0.75NA objectives (Carl Zeiss) and an ORCA-ER digital camera (Hamamatsu). We captured digital images in OpenLab software (Improvision) and assembled them using Photoshop software (Adobe) with consistent contrast adjustments across all images.
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10

Imaging PPa and Lysosomes in MDA-1986 Cells

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All cell imaging experiments were performed using a Nikon Eclipse 80i epifluorescence microscope (Melville, NY) with a 60× 1.40 oil objective, and a Hamamatsu ORCA ER digital camera (Houston, TX) was used to acquire images. The MDA-1986 cells were seeded onto poly-L-lysine precoated glass coverslips (BD, Franklin Lakes, NJ) in 12-well culture plates at a density of 50,000 cells per well and allowed to grow overnight. Subsequently, cells were treated with PPa (6.48 μg/ml) or HA-ADH-PPa (6.48 ug/ml of PPa) in 1:5:94 (v/v/v) TWEEN® 80/DMSO/media followed by incubation at 37 °C for 5 h. The cell nuclei and lysosomes were stained with DAPI (10 μg/ml) for 5 min and LysoTracker® Blue DND-22 (4 μM) for 30 min, respectively. After three washes with 3 ml of PBS, the coverslips were placed on the slide glasses for imaging. The live cells were immediately imaged using a yellow fluorescent protein (YFP, ex/em, 500/535 nm) filter set (Nikon, NY) for imaging PPa and Ultraviolet excitation (UV-2E/C, ex/em, 360/400 nm) filter set (Nikon, NY) for imaging DAPI and LysoTracker® Blue DND-22 separately.
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