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228 protocols using sirius red

1

Hepatic Fibrosis Induction in Mice

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Animal experiments were approved by the University Committee on Use and Care of Animals (UCUCA) of Southern Medical University. C57BL6/J (wild type, stock no. 005304), and Lgr5-eGFP-IRES-CreERT2 (Lgr5-GFP, stock no. 008875) mice were purchased from Jackson Laboratory Generation and genotyping of the Lgr5-GFP mice has been previously described16 (link).
For single CCL4 treatment, 8-week-old male mice received an i.p. injection of CCL4 (2 ml/kg, Sigma-Aldrich) dissolved in olive oil at a ratio of 1:4, or olive oil alone (2 ml/kg). Mice liver was harvested and analyzed at day 5.
For induction of hepatic fibrosis by CCL4, 8-week-old mice were i.p. injected with CCL4 (2 ml/kg, Sigma-Aldrich) dissolved in olive oil at a ratio of 1:4, or olive oil alone (2 ml/kg) twice a week for 6 weeks.
For Sirius Red staining, 5 µM sections were stained with Sirius Red (Sigma), and the results were quantified using Nikon Elements software. Six random fields from each section were analyzed at a final magnification of ×40. Five random sections from each mouse were analyzed, and the statistical data from 10 mice per group were obtained for comparison of the different treatment groups.
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2

Picro-Sirius Red Staining Protocol

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Tissue sections were air-dried and stained with 0.1% picro-sirius red solution, which was prepared by dissolving 500 mg sirius red (365548, Sigma-Aldrich, MO, USA) in 500 mL saturated picric acid (SP9200, Fisher Scientific, MA, USA), for 1 hour. Slides were washed with acidified water prepared by adding 5 mL acetic acid to 1 L ddH2O, and images were acquired using microscope Zeiss (Axioplan 2 Upright).
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3

Localization and Quantification of Vascular Calcification and Apoptosis

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Localisation of phosphate crystals was analyzed by von Kossa staining [25 , 26 ] (kidney, heart base, descending aorta). Sirius red staining was performed in heart tissues by 5 % (w/v) Sirius red (Sigma Aldrich, Munich, Germany) in picric acid (Sigma Aldrich, Munich, Germany) followed by washing in acidified ethanol (70 % (v/v); pH 3.5). Apoptosis measurements were performed with the in situ cell death detection kit (Roche, Ref. 11684817910, Basel, Switzerland) according to the manufacturer’s protocol. Cells were counterstained with DAPI (Vectashield, Vector Laboratories, CA, USA). Apoptosis was quantified by counting TUNEL positive VSMCs and by planimetric analysis in aortic sections (Keyence BZ-II Analyzer, Neu-Isenburg, Germany).
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4

Quantifying Collagen in HSF Cultures

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The total amount of collagen present in the HSF cultures was examined by Sirius red staining, as previously described (17 (link)). The HSFs were treated as described above. After 72 h of treatment, the cells were stained with Sirius red (Sigma-Aldrich) and incubated at 37°C for 90 min. The plates were then washed with tap water and air-dried overnight. The Sirius red stain was dissolved in 0.1 M sodium hydroxide (NaOH; Sigma-Aldrich) and the absorbance was read at 540 nm using a 96-well microplate reader (Bio-Rad, Hercules, CA, USA).
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5

Histological Evaluation of Cardiac Fibrosis

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Four‐micrometer paraffin sections were stained with Masson's trichrome (Sigma‐Aldrich). Fibrosis was quantified as the relative area of blue staining (collagen) compared to the left ventricle surface, as an average of 3–4 sections per heart at the level of the papillary muscle, using ImageJ software. The anterior wall thickness of the left ventricle was measured on Masson's trichome‐stained sections as an average of 3–4 sections per heart. For Sirius Red staining of collagen, 3–4 sections per heart were incubated with 0.1% Sirius Red (Sigma‐Aldrich). Sections were photographed with identical exposure settings under ordinary polychromatic or polarized light microscopy. Total collagen content was evaluated under polychromatic light. Interstitial collagen subtypes were evaluated using polarized light illumination; under this condition, thicker type I collagen fibers appeared orange or red, whereas thinner type III collagen fibers were yellow or green. Quantifications were performed with LAS software (Leica). For quantification of myofibroblasts, sections were stained with an antibody against smooth muscle actin (αSMA, clone 1A4 Sigma‐Aldrich, dilution 1/300). Myofibroblast density was quantified using ImageJ software by examining 10 fields per section at 20× magnification, in a blinded fashion.
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6

Histological Analysis of Hepatic Tissue

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Tissues were harvested, fixed, embedded in paraffin, and cut into 8 µM sections. For H&E staining, hepatic slides were stained with hematoxylin solution (Solarbio, Beijing, China) for 8 min and eosin solution (WeiAo, Shanghai, China) for 40 s. For Sirius red staining, slides were stained with Sirius red (Sigma-Aldrich, USA) for 60 min and rinsed with hydrochloric acid (0.01 M) for 1 min.
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7

Quantitative Sirius Red Analysis of Adrenal Collagen

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Sirius Red staining was used to visualize collagen present in the adrenal capsule [12 (link),13 (link)]. Briefly, after deparaffinization and rehydration, sections were incubated with Mayer′s Hematoxylin (Merck, Darmstadt, Germany) and Celestine Blue (Merck, Darmstadt, Germany) for 8 min followed by the incubation with 0.1% (w/v) Sirius Red (Merck, Darmstadt, Germany) for 1 h, at room temperature. Sections were washed with acidified water, dehydrated, and mounted in a resinous medium.
Slides were scanned using the image acquisition software Olympus VS110 virtual slide scanning system (Olympus, Tokyo, Japan). Images were analyzed using the FIJI as performed for the ORO staining and then the area stained with Sirius Red was normalized to the perimeter of each adrenal gland, obtained by using the same software.
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8

Quantifying Tubulointerstitial Fibrosis in Kidney

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To evaluate the severity of tubulointerstitial fibrosis, 4% phosphate-buffered paraformaldehyde-fixed kidney sections were stained with Masson’s trichrome or with sirius red following the manufacturer’s protocols (Merck KGaA, Darmstadt, Germany) [20 ]. More than 20 fields were randomly selected for quantitative evaluation and analyzed in a blinded manner using ImageJ 1.53a software (National Institutes of Health, Bethesda, MD, USA).
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9

Histological Analysis of Muscle Regeneration

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Tissue sections were prepared and stained with hematoxylin and eosin solution (Merck, Darmstadt, Germany) or with 0.1% solution of Fast Green and 0.1% solution of Sirius Red (Merck, Darmstadt, Germany) in 1.2% picric acid. The analysis of the specimens was conducted using the Nikon Eclipse 80i microscope (Nikon Instruments Inc., Melville, NY, USA). Histological measurements were taken in 5 randomly selected fields of each tissue section. The number of muscle fibers was calculated per mm2 of muscle. To analyze muscle regeneration, normal and regenerative muscle fibers (characterized by centrally located nuclei) were counted. Fibrosis area was calculated as the percentage of the PicroSirius Red-stained collagen in the muscles per total area of tissue (Sirius Red- and Fast Green-stained tissue) using ImageJ 1.48v (NIH, Bethesda, MD, USA).
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10

Histochemistry and Immunohistochemistry Protocol

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Evans Blue, triphenyl tetrazolium chloride, hematoxylin-eosin, sirius red, Triton X-100, calcium chloride, zinc chloride, and acetic acid were from Merck (Madrid, Spain). The Masson trichrome staining kit, anti-EMMPRIN, anti-CD68, HRP/DAB IHC kit, and HRP-conjugated secondary antibodies were from Abcam (Cambridge, United Kingdom). Anti-MMP-9 and anti-MMP-13 were from Santa Cruz (Heidelberg, Germany). Ketamine was from Pfizer (New York, NY); the isoflurane was from Abbvie (North Chicago, IL); the propofol was from Fresenius (Bad Homburg, Germany); the fentanyl was from Kern Pharma (Madrid, Spain); the diazepam was from Roche (Basel, Switzerland); and the amiodarone was from Sanofi Aventis (Gentilly, France).
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