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7 protocols using annexin 5 fitc

1

Multiparametric Flow Cytometry Antibodies

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Antibodies used in this study were the following: rat anti mouse Ly6G-violet 450 (Tonbo Biosciences), rat anti mouse Gr1-FITC (Tonbo Biosciences), rat anti mouse/human CD45-PE (BD Biosciences), rat anti mouse/human CD45-APC (Bio Legend), rat anti mouse/human CD11b-FITC (BD Biosciences), rat anti mouse CD177-Alexa Fluor 647 (R&D Systems), rat anti human CD177-APC (Bio Legend), mouse anti phage M13-PE (Santa Cruz), rabbit anti mouse/human pSmad2 (Cell Signaling), rabbit anti mouse/human pSmad3 (Abcam), rabbit anti mouse/human Smad2/3 (Cell Signaling), Annexin-V FITC (Biotium) and SA-Alexa Fluor 568 (Thermo Scientific).
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2

Evaluating Apoptosis in PDAC Cell Lines

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To evaluate the apoptotic rate for PDAC cell lines, 5000 cells/well were seeded in white 96-well plates and cultured for 24 h with Pladienolide-B or vehicle, and apoptotic rates were measured using Caspase-Glo 3/7 Reagent (Promega), following the manufacturer’s instructions [36 (link)]. For Annexin-V staining, floating and attached cells were pooled and resuspended in 1X Annexin-V staining buffer containing Annexin-V-FITC diluted 1:20 (Cat no. 29001, Biotium, Freemont, CA) and then, incubated for 20 min at room temperature prior to flow cytometric analysis. Cytometry data was acquired with an Invitrogen™ Attune™ NxT 4-laser cytometer with software version 3.1.1.
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3

Apoptosis Induction by BG-4 Treatment

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Cells were seeded at 1 × 105 cells/mL in a 6-well plate and allowed to attach overnight in a humidified atmosphere containing 5% CO2 at 37 °C. After which, cells were treated with 62.5 and 125 μg/mL BG-4 for 16 h. After treatment, growth medium was removed and cells washed with ice-cold PBS twice and detached from the well. Cell suspension was centrifuged at 500 × g for 5 min at 4 °C and re-suspended in Annexin V binding buffer. Cell suspension (100 μL) was stained with 10 μL Annexin V-FITC (Biotium, Inc., Hayward CA) and 10 μL propidium iodide (Biotium, Inc., Hayward CA) for 15 min in the dark at room temperature. After staining 400 μL of binding buffer was added the suspension was analyzed using BD Accuri C6 flow cytometer (BD Biosciences, San Jose CA). A total of 20,000 events were acquired and analyzed using BD Accuri C6 software package.
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4

T-cell Marker Analysis in Lck-Dlx5 Mice

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Flow cytometry was performed with a LSRII machine (Becton Dickinson) to analyze T-cell developmental and cell death markers from healthy Lck-Dlx5 mice. CD4-APC/Cy7, CD8-PE, CD44-APC/Cy7, CD25-PE, Notch1-Alexa647 and Notch3-APC antibodies were obtained from BioLegend. Annexin V-FITC and ethidium homodimer III were from Biotium. Data were analyzed with FlowJo software.
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5

Quantifying Apoptosis in Aβ42-Treated N2a Cells

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The N2a cells were grown on coverslips, coated with poly D-lysine (0.1 mg/mL) in minimum essential medium (MEM, GIBCO) containing 10% heat-inactivated fetal bovine serum (FBS) and pen/strep (1 μg/mL). Prior to the experiment, the media were replaced with fresh MEM, which lacked growth factors, and treated with Aβ42 (10 μM), along with different doses of Cur and/or SLCP (in μM: 1, 0.1, and 0.01), dissolved in methanol, and diluted with fresh MEM for 24 h. Then coverslips were washed in PBS twice, stained with Annexin-V-FITC (apoptosis detection kit; Biotium, Hayward, CA), as per manufacturer's instruction. The images were taken using a fluorescence microscope (Leica, Germany) with blue/green/red filters. The total number of cells and the numbers of apoptotic cells were counted per microscopic field and expressed as a percentage of dead neurons. At least 30 microscopic fields from three independent experimental setups were used for counting.
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6

Flow Cytometric Analysis of BV2 Cell Markers

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BV2 cells were stained with FITC-conjugated anti-CD40 (eBioscience, San Diego, CA, USA) and Pe-Cy5-conjugated anti-CD86 (eBioscience, San Diego, CA, USA). Appropriate isotype control antibodies were used where necessary to set gates for cell marker positivity. Typically, proportion of isotype control antibody-stained cells was <1%. Detection of apoptosis was performed via annexin V-FITC staining (Biotium, Hayward, CA, USA). Cells positive for annexin V-FITC were considered apoptotic. For detection of phagocytosis, BV2 cells were plated in 24-well plates at 1 × 105/well and pretreated with GYY4137 for 24 h. Latex beads (1 μm, yellow-green) were preopsonized in PBS supplemented with 50% FCS. Medium was discarded and the preopsonized beads were added (10 beads per cell), and cells were incubated at 37 °C for an additional hour. BV2 cells were analyzed with a CyFlow Space flow cytometer (Partec, Munster, Germany). Results of cytofluorimetry are presented as the proportion of cells bound by an appropriate antibody or as mean fluorescent intensity (mfi) of cell population. Cells were gated on live cells (R1) according to FSC vs. SSC and on cell singlets (R2) according to FSC vs. FSC-width, and mfi (arithmetic mean) was determined for all the cells within G1 (R1 and R2) by FloMax software for cytometry (Partec, Munster, Germany).
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7

Apoptosis Assay for PDAC Cell Lines

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To evaluate the apoptotic rate for PDAC cell lines, 5,000 cells/well were seeded in white 96-well plates and cultured for 24 h with Pladienolide-B treatment or vehicle, and apoptotic rate was measured using Caspase-Glo 3/7 Reagent (Promega), following the manufacturer's instructions (35) . For Annexin-V staining, oating and attached cells were pooled and resuspended in 1X Annexin-V staining buffer containing Annexin-V-FITC diluted 1:20 (Cat no. 29001, Biotium, Freemont, CA) and then, incubated for 20 min at room temperature prior to ow cytometric analysis. Cytometry data was acquired with an Invitrogen™ Attune™ NxT 4-laser cytometer with software version 3.1.1.
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