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52 protocols using acetone

1

Synthesis of Functional Polymers

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Acetone and ethanol were purchased from Carl Roth. Acetonitrile, 2,2-dimethoxypropane, p-toluenesulfonic acid, tetrahydrofuran and sodium chloride (98%) were purchased from Sigma Aldrich (Taufkirchen, Germany). Acryloyl chloride (96%) was purchased from Merck (Darmstadt, Germany). Azobis(isobutyronitril) (98%), triethylamine and trifluoroacetic acid were purchased from Acros Organics (Geel, Belgium). Dichlormethane, diethylether, ethyl acetate, methanol, hexane and dimethylformamide were purchased from VWR Prolabo (Darmstadt, Germany). Dopamine hydrochloride (99.96%) and glycinamide hydrochloride were purchased from BLD Pharmatech (Kaiserslautern, Germany). Hydroquinone was purchased from J.T. Baker (Phillipsburg, NJ, USA). Potassium carbonate, lithium hydroxide and magnesium sulfate were purchased from Fisher Scientific. Methyl trifluoroacetate was purchased from Fluorochem (Hadfield, UK). N-[3-(Dimethylamino)propyl]acrylamide (98%) and N-(2-hydroxyethyl)acrylamide (98%) were purchased from TCI (Tokyo, Japan). Sodium hydrogencarbonate, hydrochloric acid (37%) and toluene were purchased from VWR Chemicals.
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2

Synthesis of Fluorinated Polymer Coatings

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Fluorolink MD700 (a perfluoropolyether (PFPE)-methacrylate) was purchased from Acota (United Kingdom), 1H,1,2H,2H-perfluorooctanol (13FOOl) was purchased from Apollo Scientific (United Kingdom). Diphenyl(2,4,6-trimethylbenzoyl)phosphine oxide (TPO) and Sudan 3 were purchased from Sigma-Aldrich (Germany). Cyclohexanol, cyclohexane and chloroform were purchased from Merck (Germany). Acetone and 2-propanol were purchased from Carl Roth (Germany). Tinuvin 384-2 was kindly provided by BASF (Germany).
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3

Fungal Activity Quantification via FDA Hydrolysis

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We measured he fluorescein diacetate (FDA) hydrolytic activity to indicate fungal activity, which is considered as an indicator of fungal biomass (Gaspar et al., 2001 (link)). We quantified the hydrolysis of fluorescein diacetate (FDA, Sigma-Aldrich) by adding 0.75 ml of 100 mM of potassium phosphate buffer (pH 7.6) and 0.1 ml of 2 mg/ml FDA (Adam and Duncan, 2001 (link)) to 0.5 g of dry soil. The reaction mixture was placed on a shaker (New BrunswickTM, Eppendorf) at 150 rpm at 30°C for 2 h. The reaction was terminated by adding 0.75 ml of acetone (Roth, Germany). After shaking and centrifugation of samples for 5 min at 3000 rpm, the extracted fluorescein was determined at 490 nm by spectrophotometry (UV-3100 PC, VWRTM, Germany).
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4

DNA Origami Structures Characterization

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Glass slides were sonicated for 5 min with HellmanexIII (Sigma-Aldrich), washed 5 x with double distilled water and sonicated for 5 min each with Acetone (Roth) and 2-Propanol (Roth). Clean glass slides were blown dry with nitrogen and glow discharged under oxygen in a plasma cleaner (Binder) for 5 min. In order to locate the sample in the center of the glass slide a circle was drawn with a grease pencil on the glass slide. Open and closed state DNA origami structures with AuNPs attached (50 pM) were deposited inside the grease circle for one minute, washed two times with 1 ml doubly distilled water and blown dry with nitrogen. Samples for Darkfield microscopy were imaged with a home-built dark-field setup in transmission mode using a 100 x air objective (Olympus) and an oil condenser (Olympus NA 1.4) with a 100 W halogen bulb as illumination source. Images were taken with 100 ms exposure time and 2 x binning on a color CMOS Camera (Thorlabs Kiralux CS895CU). The dark-field scattering spectra were collected with the same home-built dark-field coupled to an Acton SP2300 spectrometer (Princeton Instruments). To analyze the RGB intensity values of individual nanostructures, the images were first thresholded and individual spots then automatically detected.
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5

Immunofluorescence Staining of NIS in HSP70B-MSCs

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HSP70B-NIS-MSCs were seeded directly on FBS-coated microscope slides and grown until 60% confluent. 6 h after hyperthermia, the slides were air-dried overnight at room temperature and monolayers fixed with 80% methanol (Carl Roth) for 5 min at 4 °C, followed by 100% acetone (Carl Roth) for 2 min at -20 °C. Following blocking with 12% bovine serum albumin (Sigma-Aldrich) in phosphate- buffered saline (PBS; Sigma Aldrich) for 30 min, cells were then incubated with a primary mouse monoclonal NIS-specific antibody (Merck Millipore; dilution 1:500) for 90 min. A secondary Cy3 AffiniPure donkey anti-rabbit IgG antibody (Jackson ImmunoResearch; dilution 1:400) and bisbenzimide (Hoechst; Sigma Aldrich; dilution 1:2000) to counterstain nuclei were added for 30 min. Pictures were taken using an Axiovert 135 TV fluorescence microscope in combination with an AxioCam MRm CCD camera and the AxioVision Rel. 4.8 software (Carl Zeiss Microscopy GmbH, Jena, Germany).
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6

Synthesis and Characterization of Amphiphilic Copolymers

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Tetrahydrofuran (THF) and diethyl ether were HPLC-grade and obtained from VWR International GmbH (Darmstadt, Germany). For polymer synthesis, THF was dried by refluxing over potassium and sodium and subsequently distilled. Maleic anhydride (MA) and aniline were purchased from Thermo Fisher Scientific and VWR International GmbH, respectively. Tetradecyl acrylate (TDA) and poly(ethylene glycol) methyl ether methacrylate (methoxy-PEG-monomethacrylate, mPEG-MAc) with an average Mn of 950 were obtained from TCI Deutschland GmbH (Eschborn, Germany) and used as received. 2,2′-Azobis(2-methylpropionitril) (AIBN), 2-(2-(2-(2-azidoethoxy)ethoxy)ethoxy)ethan-1-amine (azido-TEG-amine) and triethylamine (TEA) were from Sigma-Aldrich Chemie GmbH (Taufkirchen, Germany). Acetone was purchased from Carl Roth GmbH + Co. KG (Karlsruhe, Germany), and aqueous ammonia (25% m/V) was obtained from Grüssing GmbH (Filsum, Germany). Deuterated solvents, CDCl3, DMSO-D6, both with tetramethyl silane, and D2O were purchased from ARMAR GmbH (Leipzig, Germany). Float-A-Lyzer® dialysis devices from Repligen Europe B.V. (Dreda, The Netherlands), with a cellulose ester membrane and a molecular weight cut off of 0.1–0.5 kDa were used.
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7

Synthesis of Rare-Earth Nanocrystals

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YCl3·6H2O (99.99%), YbCl3·6H2O (99.99%), ErCl3·6H2O (99.99%), oleic acid (90% technical grade), and NaOH (98%) were purchased from Sigma-Aldrich. 1-octadecene (ODE, 90% technical grade) and NH4F (99.99%) were obtained from Alfa Aesar. Chloroform, cyclohexane, acetone, and ethanol were purchased from Carl Roth GmbH. Low-price Ln-chlorides were puchased from XI’AN FUNCTION MATERIAL GROUP. All chemicals were used without further purification.
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8

Immunofluorescent Staining of Adherent Cells

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Cells were grown for 24 h either in SCM or in CDM on coated or noncoated six-well plates. We fixed the cells by removing the medium, gently washing with 2 mL PBS, and incubating with acetone (Carl Roth, Karlsruhe, Germany) for 10 min at −20°C. After two washes with PBS, the sample was incubated with 2 mL blocking solution (10 mg mL−1 BSA in PBS) for 30 min at room temperature. The sample was again washed twice and then incubated with a 1 : 80 dilution of Alexa Fluor® 555 Phalloidin (Life Technologies, Darmstadt, Germany, A340555) or a 1 : 200 dilution of DyLight 488 integrin α4 antibody MM0417-2L30 (R&D Systems GmbH, Wiesbaden, Germany, NBP2-11738G) in PBS for 2 h at room temperature in the dark. Finally, the nuclei were counterstained with DAPI (AppliChem, Darmstadt, Germany) and the sample was embedded in Mowiol (Carl Roth) according to the manufacturers' recommendations.
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9

Synthesis and Modification of Nanoparticles

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Chemicals for the nanoparticle synthesis were purchased and used without further purification: ethanol absolut (VWR), diethylene glycol (99%, Alfa Aesar), N-methyl-2,2‘-iminodiethanol (Merck), sodium hydroxide pellets (Merck), Hydrochloric acid solution (in water 1 M, Grüssing GmbH), Sodium hydroxide solution (in water 1 M, Grüssing GmbH), acetone (technical grade, Carl Roth GmbH), iron(II) chloride tetrahydrate (Glentham Life Sciences) and iron(III) chloride hexahydrate (puriss. p.a. reag., ≥99%, Sigma-Aldrich). Ligands for the nanoparticle modification were obtained from Sigma-Aldrich L-histidine monohydrochloride monohydrate (≥99%), L-lysine monohydrochloride (BioUltra, ≥99.5% (AT)); 4-mercaptobenzoic acid (99%); 4-aminobenzoic acid (Reagent Plus, ≥ 99%); DL-Lactic Acid (~90%), phosphacholine chloride calcium salt tetrahydrate (Sigma grade); cysteamin (> 98%); L-(+)-tartaric acid (99%), from Alfa Aesar L-Arginine (98%), L-(−)-malic acid (99%), 4-hydroxybenzoic acid (99%), (±) Mandelic Acid (99%) and from Grüssing GmbH trisodium citrate dihydrate.
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10

Characterization of Chondrocyte Differentiation

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Monolayers were fixed in ice-cold methanol, while pellet cultures were placed in Tissue-Tek® Cryomold® Standard (Sakura Fintek, Torrance, CA, USA) before being cryopreserved in liquid nitrogen. The frozen pellets were sectioned, placed on SuperFrost® cryosection slides (Thermo Fischer Scientific GmbH) and fixed with 3% ice-cold acetone (Carl Roth GmbH). Alizarin Red S, Oil redO and alcian blue stainings were performed as outlined previously [23 (link), 24 (link), 26 (link)]. In addition, immunohistochemical stainings were performed on monolayers and pellets using the following antibodies: Col I - monoclonal anti Col Iα1 (5 μg/mL; Abcam pls, Cambridge, Great Britain); Col II - polyclonal Col IIα1 antibodies (5 μg/mL; Acris Antibodies GmbH, Herford, Germany); Col X - polyclonal Col X antibodies (5 μg/mL; Abcam pls). The immunostainings were visualised with the Avidin-Biotion complex method using the protocols, biotinylated antibodies, blocking serum and peroxidase from the VECTASTAIN® Universal Elite® ABC Kit (Vector Laboratories, Burlingame, CA, USA) and the VECTOR® NovaRED™ peroxidase substrate kit (Vector Laboratories). The slides and wells were counterstained with haematoxylin (Sigma-Aldrich). For control stainings the primary antibodies were replaced with non-immune IgG antibodies (Sigma-Aldrich).
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