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Alexa fluor 488 donkey anti chicken

Manufactured by Jackson ImmunoResearch
Sourced in United States

Alexa Fluor 488 donkey anti-chicken is a secondary antibody conjugated with the Alexa Fluor 488 fluorescent dye. It is designed to bind to primary antibodies raised in chickens, allowing for the detection and visualization of target proteins or molecules in various biological applications.

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29 protocols using alexa fluor 488 donkey anti chicken

1

Tracing BNST Neuronal Projections

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All mice used for behavioral and anatomical tracing experiments were stained for GFP to verify that viral spread of AAV-Cre-GFP was confined to the BNST. Mice were anesthetized with Avertin and transcardially perfused with 30 ml of 0.01 M PBS followed by 30 ml of 4% paraformaldehyde (PFA) in PBS. Brains were extracted and stored in 4% PFA for 24 h at 4 °C before being rinsed twice with and stored in PBS. 45 μm slices were obtained on a Leica VT100S and stored in 50/50 PBS/Glycerol at 4 °C. For the immunohistochemistry, slices were first washed in PBS, then incubated in 0.5% Triton/PBS. Slices were washed in PBS again followed by a 1 hour blocking step in 1% BSA, 10% Normal Donkey Serum in 0.1% Triton-X-100 followed by a 24 h incubation at 4 °C in chicken anti-GFP (1:500; Santa-Cruz) in blocking buffer. The following day, slices were washed in PBS and incubated in Alexafluor 488 Donkey anti-chicken (1:500; Jackson ImmunoResearch), then washed again in PBS. Slices were then mounted on glass slides, coverslipped with Vectashield with Dapi, and imaged using a Zeiss AXIO Zoom V16 microscope with ZEN pro 2012 software.
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2

Immunohistochemical Characterization of Dorsal Root Ganglia

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P11 mice were transcardially perfused with 2% PFA in a sodium acetate buffer, pH 6. Dorsal root ganglia were dissected from L1-L3 segments and immersion fixed further for 2 hours. The tissue was cut immediately using a vibratome into 100 μm sections and blocked in PBS-T containing M.O.M. blocker (Vector Laboratories) for an hour to prevent the secondary antibody from binding to non-specific mouse antigens. Sections were then treated as described for the previous immunohistochemistry protocol and incubated with antibodies against Parvalbumin - chicken polyclonal anti-Parvalbumin (1:2000; custom made) and SMN - mouse monoclonal anti-SMN (1:50; BD Biosciences, 610646). Sections were washed and further incubated with the secondary antibodies: Alexa Fluor 488 donkey anti-chicken (Jackson ImmunoResearch, 703–545-155), donkey anti-mouse-Cy5 IgG (Jackson ImmunoResearch, 715–175-151) and counter-stained with DAPI. Sections were washed and mounted in 30% glycerol in PBS.
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3

Multicolor Immunofluorescence Staining Protocol

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Chicken anti-GFP antibody (Abcam, ab13970, 1:500), Rabbit anti-Prospc (Millipore, ab3786, 1:500), Rat anti-Ki67 (ebioscience, 14-5698-82, 1:200), Rat anti-F4/80 (BioRad, MCA497GA, 1:200), APC anti-mouse CD326 (BioLegend, catalog#118214), PE/Cyanine7 anti-mouse CD45 (BioLegend, catalog#103114), PE/Cyanine7 anti-mouse CD31 (BioLegend, catalog#102418), PE anti-mouse F4/80 (BioLegend, catalog#123110), APC anti-mouse CD11c (BioLegend, catalog#117310), PerCP-Cyanine5.5 anti-human/mouse CD11b (Tonbo, catalog#65-0112), PE anti-mouse FOXP3 (BD biosciences, catalog#560408), APC anti-mouse CD4 (BD biosciences, catalog#553051), FITC Mouse IgG1 isotype control (BD biosciences, catalog#555748), PE Mouse IgG1 isotype control (BD biosciences, catalog#555749), APC Mouse IgG1 isotype control (BD biosciences, catalog#555751), FITC anti-human CD90 (BD biosciences, catalog#555595), PE anti-human CD73 (BD biosciences, catalog#550257), APC anti-human CD105 (BD biosciences, catalog#562408), FITC anti-human CD45 (BD biosciences, catalog#555482), PE anti-human CD34 (BD biosciences, 550761), Alexa Fluor 488 Donkey anti Chicken (Jackson Immuno Research, catalog#703-545-155), Alexa Fluor Cy3 Donkey anti Rat (Jackson Immuno Research, catalog#712-165-153), and Alexa Fluor 488 Donkey anti Rabbit (Jackson Immuno Research, catalog#711-545-152).
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4

Neuroinflammation Assessment in Prefrontal Cortex

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To evaluate the presence of neuroinflammation after peripheral LPS treatment, prefrontal coronal sections were tagged for glial fibrillary acidic protein (GFAP) or ionized calcium binding adaptor molecule (Iba-1) costained with CD68 as astrocyte and microglial markers, respectively. Free-floating sections were rinsed of cryoprotectant solution, incubated in antigen unmasking solution (Vector, Burlingame, CA, USA) at 95°C for 7 min, and rinsed 3 × 5 min in 1× PBS. Sections were blocked in 10% donkey serum, 0.3% Triton, and PBS for 2 h and incubated overnight in primary antibody solution, including 1% bovine serum albumin (BSA), 0.3% triton, and PBS (chicken anti-GFAP: 1:500, ABCam, Cambridge, MA, USA; goat anti-Iba-1: 1:500, ABCam; mouse anti-rat CD68: 1:200, BioRad, Hercules, CA, USA). The sections were rinsed and incubated for 2 h in secondary antibody solution of 1% BSA in PBS (Alexa Fluor 488 donkey anti-chicken, 1:500, Jackson, Bar Harbor, ME, USA; Alexa Fluor 488 donkey anti-goat, 1:500, Life Technologies, Waltham, MA, USA; Alexa Fluor 594 donkey anti-mouse, 1:800, Life Technologies, Waltham, MA, USA). After a final rinse, slices were mounted onto gelatin-coated slides and coverslipped with mounting medium containing DAPI (Vector).
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5

Immunofluorescence Staining of Mouse Brain

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Mice were anesthetized with phenytoin/pentobarbital and perfused with phosphate-buffered saline (PBS; pH 7.4), followed by 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB; pH = 7.4). After an overnight post-fix in 4% PFA, brains were cryoprotected overnight in 30% sucrose before being embedded in OCT and stored at −80 °C. Free-floating sections (30 µm) were prepared with a cryostat. They underwent three washes in PBST (PBS + 0.3% Triton X-100) and were blocked in 3% normal donkey serum in PBST (1–2 h). Sections were then incubated overnight at 4 °C in primary antibodies, including rabbit anti-Satb2 1:2500 (ab34735, Abcam), mouse anti-Satb2 1:1500 (ab34735, Abcam), rabbit anti-Fos 1:2000 (#22505, Cell Signaling; ab190289, Abcam), goat anti-Fos 1:300 (sc-52-G, Santa Cruz), chicken anti-GFP 1:10,000 (ab13970, Abcam), goat anti-CGRP 1:1000 (ab36001, Abcam), and/or rabbit anti-dsRed 1:1000 (632475, Takara). The next day, the tissue was washed three times in PBS and incubated 1–2 h in appropriate secondary antibodies including Alexa Fluor 488/594 donkey anti-sheep, Alexa Fluor 488/594 donkey anti-goat, Alexa Fluor 488/594 donkey anti-rabbit, or Alexa Fluor 488 donkey anti-chicken (1:500; Jackson Immunoresearch Laboratories). Tissue was washed three times in PBS, mounted onto glass slides, and coverslipped with Fluoromount-G (Southern Biotech).
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6

Immunohistochemistry for CSF1, Cre, and eGFP

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Immunohistochemistry, imaging, and quantification were performed as previously described [40 (link)]. Primary antibodies included rabbit anti-CSF1 (ab233387; Abcam), rabbit anti-Cre (69050; Novagen), or chicken anti-eGFP (ab13970; Abcam). Secondary antibodies included Alexa Fluor 488 donkey anti-rabbit (Jackson ImmunoResearch, 711-545-152), Alexa Fluor 555 donkey anti-rabbit (A32794, Invitrogen), or Alexa Fluor 488 donkey anti-chicken (703-545-155, Jackson ImmunoResearch).
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7

Immunohistochemical Characterization of Dorsal Root Ganglia

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P11 mice were transcardially perfused with 2% PFA in a sodium acetate buffer, pH 6. Dorsal root ganglia were dissected from L1-L3 segments and immersion fixed further for 2 hours. The tissue was cut immediately using a vibratome into 100 μm sections and blocked in PBS-T containing M.O.M. blocker (Vector Laboratories) for an hour to prevent the secondary antibody from binding to non-specific mouse antigens. Sections were then treated as described for the previous immunohistochemistry protocol and incubated with antibodies against Parvalbumin - chicken polyclonal anti-Parvalbumin (1:2000; custom made) and SMN - mouse monoclonal anti-SMN (1:50; BD Biosciences, 610646). Sections were washed and further incubated with the secondary antibodies: Alexa Fluor 488 donkey anti-chicken (Jackson ImmunoResearch, 703–545-155), donkey anti-mouse-Cy5 IgG (Jackson ImmunoResearch, 715–175-151) and counter-stained with DAPI. Sections were washed and mounted in 30% glycerol in PBS.
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8

Immunolabeling of Transgenic Mouse Brain Tissue

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Mice were anesthetized with Beuthansia (0.2 ml, i.p.; Merck) and perfused transcardially with PBS followed by 4% PFA in PBS. Brains were post-fixed overnight in 4% PFA at 4 °C, cryoprotected in 30% sucrose, frozen in OCT compound (ThermoFisher), and stored at −80 °C. Coronal sections (30 μm) were cut on a cryostat (Leica Microsystems) and collected in cold PBS. For immunohistochemistry experiments, sections were washed three times in PBS with 0.2% Triton X-100 (PBST) for 5 min and incubated in blocking solution (3% normal donkey serum in PBST) for 1 h at room temperature. Sections were incubated overnight at 4 °C in blocking solution with primary antibodies including chicken-anti-GFP (1:10000, Abcam, ab13970) and rabbit-anti-dsRed (1:2000, Takara Bio, 632496). After 3 washes in PBS, sections were incubated for 1 h in PBS with secondary antibodies: Alexa Fluor 488 donkey anti-chicken, Cy5 donkey anti-chicken, Alexa Fluor 594 donkey anti-rabbit, and/or Cy5 donkey anti-rabbit (1:500, Jackson ImmunoResearch). The tissue was washed 3 times in PBS, mounted onto glass slides, and coverslipped with Fluoromount-G (Southern Biotech). Fluorescent images were acquired using a confocal microscope. All digital images were processed in the same way between experimental conditions to avoid artificial manipulation between different datasets.
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9

Immunofluorescence Imaging of Kidneys

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Kidneys were fixed in 4% PFA overnight at 4 °C, washed with PBS, embedded in paraffin blocks, 5 µm sections were generated and blocked in 10% normal donkey serum in PBS containing 0.3% Triton-X (blocking buffer) at room temperature for 1 h. Primary antibodies used included chick anti-GFP (1:250; Aves Labs), and rabbit anti-phospho-S6 ribosomal protein Ser240/244 (1:500; Cell Signaling Technology, Danvers, MA, USA, Catalog #5364). Slides were incubated with primary antibody in blocking buffer overnight at 4 °C, and washed 3 times in PBS with 0.1% Tween-20 for 20 min at room temperature. After washing, slides were incubated with secondary antibody (Alexa Fluor 488 donkey anti-chicken; 1:250; Jackson ImmunoResearch, Catalog #703-545-155 and Cy3 donkey anti-rabbit IgG; 1:250; Jackson ImmunoResearch) at room temperature for 1 h followed by washing and DAPI staining at 4 °C. Slides were mounted in Prolong Gold Antifade Reagent (Cell Signaling Technology) and imaged with a confocal Nikon A1R inverted microscope with a 20X objective lens using a pinhole of 1.2 μm on all channels at a resolution of 1024 × 1024.
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10

Visualizing Dopaminergic Neurons in TH-GCaMP5 Mice

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TH-GCaMP5 transgenic mice (n = 3) were deeply anesthetized via inhalation of isoflurane and transcardially perfused with ice-cold saline followed by 10% formalin. Brains were harvested, postfixed in 10% formalin for 24 h, and then transferred into 30% sucrose for cryopreservation until sectioning (30 µm per section) throughout the brain using a sliding microtome. Brain sections were processed using free-floating immunohistochemistry to analyze the coexpression of TH in neurons expressing the calcium indicator GCaMP. Sections were blocked in 3% normal donkey serum, followed by incubation in primary antibodies, rabbit anti-tyrosine hydroxylase (1:1,000, AB-152; Millipore) and chicken anti-GFP (1:1,000, ab-13970; Abcam; GFP is a component of GCaMP5), and detected with fluorescent-labeled secondary antibodies Alexa Fluor 594 donkey anti-rabbit (1:200, A-21207; Thermo Fisher Scientific) and Alexa Fluor 488 donkey anti-chicken (1:200, 703-546-155; Jackson ImmunoResearch Laboratories), respectively. Histological sections from each mouse at the level of the area postrema were examined microscopically. Cells within the NST demonstrating antibody label for TH, GFP, or both labels were counted and photographed.
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