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Sir actin

Manufactured by Cytoskeleton
Sourced in United States

SiR-actin is a fluorescent probe designed for the visualization of actin filaments in live cells. It is a silicon-rhodamine-based dye that binds specifically to F-actin, allowing for real-time monitoring of actin dynamics. The probe is membrane-permeable and can be used to label actin structures without disrupting their function.

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42 protocols using sir actin

1

Fluorescent Labeling and Inhibition Assay

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AF488 N-hydroxysuccinimide (NHS) ester and AF647 NHS ester were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Rhodamine 6G (Rh6G) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Calcein AM was obtained from Dojindo (Osaka, Japan). SiR-Actin and the calcium channel inhibitor verapamil were obtained from Cytoskeleton (Denver, CO). The TGF-β receptor I inhibitor LY364947, PI, DX, and phenylmethylsulfonyl fluoride (PMSF) were obtained from Fujifilm (Tokyo, Japan). Rabbit polyclonal anti-fibronectin 1 antibody was purchased from Abcam (ab2413) (Cambridge, UK). pAcGFP1-Mem was purchased from Clontech (Takara Bio, Shiga, Japan). Smear Gell (product number: SG-01) for spheroid immunofluorescence was obtained from GenoStaff (Tokyo, Japan). The SlowFade mountant as a microscope was obtained from Thermo Fisher Scientific. The protease inhibitor cocktail (P8340) was purchased from Sigma-Aldrich.
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2

Fluorescence Imaging of Live Cell Cytoskeleton

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For fluorescence imaging of F-actin, mictotubule, and nuclear structures of live cells, F-actin filaments, microtubules and the nuclei were labeled with 1 μM of SiR-actin (Cytoskeleton, Denver, USA), 1μL/ml of ViaFluor® 488 (Biotium, California, USA) and 1 μg/ml of Hoechst 33342 (Invitrogen, Carlsbad, USA), respectively. Each of the dyes, dissolved in DMSO, were directly added to the culture medium, and the cells were incubated for 30 minutes prior to fluorescence imaging.
Epifluorescence images correlating to the AFM topographic images were taken by the X73 Olympus inverted microscope, which is situated under the AFM, with a 60× oil immersion lens (numerical aperture, NA = 1.35) and a Hamamatsu digital camera (C11440, ORCA-Flash2.8, Hamamastsu, Hamamatsu, Japan). Filter sets for DAPI and Cy5 channels were used for Hoechst 33342 and SiR-actin, respectively.
For confocal fluorescence imaging, a confocal microscope (LSM 880; Carl Zeiss, Oberkochen, Germany) in Airy-scan mode with a 63× oil immersion lens (NA = 1.40) was used. A 405 nm diode laser, a 488 nm Argon-ion laser and a 633 nm He-Ne laser were used as excitation lasers for Hoechst 33342, ViaFluor® 488 and SiR-actin.
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3

Visualizing Actin Filament Dynamics

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After THz irradiation, 1 µl of actin solution was collected from the film dish and mixed with 9 µl of 5.6 µg/ml SiR-actin (Cytoskeleton, Inc.), and then 1 µl of the mixture was immediately mixed with 3 µl of Vectashield Mounting Medium (Vector Laboratories) and mounted on a slide glass. Prepared actin solutions were observed using IX83 fluorescence microscopy (Olympus). Images were captured with an ORCA-Flash 4.0 LT PLUS Digital CMOS camera (Model C11440-42U30, Hamamatsu). Numbers of actin filaments were measured from obtained images using Image J software.
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4

Imaging and Quantifying Cellular Dynamics

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Cells grown on 12-mm No. 1.5 coverslips (Carolina Biological Supply) were fixed with 4% paraformaldehyde (Electron Microscopy Sciences), washed with PBS, and permeabilized with either 0.1% TX100 or 0.1% saponin in a 3% BSA/PBS buffer. Subsequent primary and secondary antibody incubations were carried out in the permeabilization buffer. Coverslips were mounted in ProLong Gold reagent supplemented with DAPI (Invitrogen). Images were acquired with either a Zeiss LSM 800 laser scanning confocal microscope with a 63× Plan Apo (NA = 1.4) oil immersion objective and Zeiss Efficient Navigation software or an UltraVIEW VoX spinning disk confocal microscope (PerkinElmer) that consisted of a Nikon Ti-E Eclipse inverted microscope equipped with 60× CFI PlanApo VC, NA 1.4, oil immersion objective and a CSU-X1 (Yokogawa) scan head that was driven by Volocity (PerkinElmer) software. For live cell imaging analysis of microtubules and F-actin, the cells were labeled with SiR-tubulin and SiR-actin (Cytoskeleton Inc.) as per the manufacturer’s instructions. An automated analysis pipeline was developed with Cell Profiler (McQuin et al, 2018 (link)) for the quantification of nuclear versus cytoplasmic ratios of the NLS-td-Tomato-NES reporter (Zhang et al, 2015 (link)).
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5

Multimodal Fluorescent Labeling Protocol

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MitoTracker Red CMXRos (100 nM; CST, 9082), MitoTracker Deep Red FM (100 nM; Invitrogen, M22426), TMRE (Life Technologies, T-669), SiR-Lysosome (1 μM; Cytoskeleton inc., CY-SC012), SiR-Actin (1 μM; Cytoskeleton inc., CY-SC001), PicoGreen dsDNA Reagent (1:10000; Invitrogen, P7581), Hoechst 33342 (1:1000; Invitrogen, H3570), Hoechst 34580 (1:1000; Invitrogen, H21486), Alexa Fluor 488 Phalloidin (1:40; Invitrogen, A12379), Alexa Fluor 555 Phalloidin (1:40; Invitrogen, A34055), Alexa Fluor 568 Phalloidin (1:40; Invitrogen, A12380), CellMask Orange (1:2000; Invitrogen, C10045), JF635-HaloLigand (100 nM; gift from L. Lavis, Ashburn, VA).
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6

Visualizing Actin Dynamics in Oocytes

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Live cell imaging was performed on cumulus-enclosed oocytes recovered from mated females. Cumulus-enclosed oocytes were treated with hyaluronidase (30IU/ml) for 10 min to remove cumulus cells, then incubated in 500ul of KSOM-BSA for 30 min at 37°C and 5% CO2 in a humidified incubator. Then 0.5 µl of SiR-actin (Cytoskeleton Inc. Denver, CO) (1 mM) was added to achieve a final concentration of 1 µM and the oocytes were returned to the incubator for an additional 30 min. Oocytes were then washed in KSOM-BSA and transferred to a poly A-lysine (Sigma-Aldrich) treated Delta-TPG plate (Bioptics, Butler, PA) containing a 10ul drop of KSOM-BSA containing Hoechst 33342 (1ug/ml) and covered with pre-equilibrated mineral oil. The plate was mounted in a Chamlide (Quorum Technology, Inc. Guelph, ON, Canada) TC-L stage top environmental chamber to maintain temperature at 37°C and a CO2 level of 5%. Imaging was performed with a 640 nm laser to detect the actin fenestrae labelled with SiR-actin.
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7

Tsetse Fly Midgut Imaging Protocol

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Teneral (<24 hours old post emergence) male tsetse were fed on horse blood (TCS Biosciences, Buckingham, United Kingdom) and three days later were offered a second meal containing horse serum (to increase tissue visibility by removing red blood cell interference) with or without 500 ng/mL NTBC. Fifteen hours post-feeding, tsetse were anaesthetized on ice, and the midgut tissue (with attached proventriculi) was dissected into ice-cold PBS and immediately fixed in fresh 4% paraformaldehyde for 1 hour at room temperature (RT). Tsetse group survival rates were determined 72 hours post-NTBC administration. Fixed tissues were washed in PBS (and stained with SiR-actin (1,100 dilution, Cytoskeleton Inc.) for 3 hours at RT and posteriorly incubated in 500 ng/mL DAPI for 10 minutes at RT. Tissues were finally suspended in 1% (w/v) low-melting agarose at approximately 40°C mixed with Slowfade Diamond oil (Molecular Probes, Eugene, United States) on a slide. Slides were imaged using a Zeiss LSM-880 confocal laser scanning microscope and tissues were 3D-reconstructed from a series of z-stacks at intervals of 1.3 μm (Zeiss Company, Oberkochen, Germany).
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8

Spatial Distribution of Myosin in Ablated Wounds

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Ablated wounds were fixed in 4% paraformaldehyde and stained for F-actin using SiR-Actin (Cytoskeleton Inc. CY-SC001, 1:1000 dilution) and p-myosin light chain2 (Rabbit, S15 - Cell Signaling 3617s #9284, 1:250 dilution). To visualize spatial distribution of myosin, we used Atto 594 (Anti-Rabbit Atto 594, Sigma Aldrich 77671, 1:500 dilution) as a secondary antibody tailored for super resolution imaging. Super resolution imaging was performed on the Abberior STED system (Abberior Instrument GmbH – Pulsed STED laser @775nm) using a water immersion lens 1.3NA. Images were taken with a scanning resolution of 20nm and 2.5D scan line.
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9

Reagents for Cell Imaging

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All chemicals were purchased from Sigma-Aldrich Chemical Co. (St Louis, MO) except otherwise indicated. SiR-actin was obtained from Cytoskeleton (Denver, CO) and FM4-64 was purchased from Thermo Fisher Scientific (Waltham, MA).
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10

Immuno-detection of Phosphorylated Proteins

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Hsp B1 (also known as Hsp25/27) antibodies were from Enzo Life Sciences (ADI-SPA-801 rabbit) and Cell Signaling Technology (HspB1 #2442 rabbit, phospho-s82[human]HspB1 #9709 rabbit). Total p38 (#9212 rabbit) and phospho-p38 (#4511 rabbit) and phospho-zyxin (#4863 #8467 rabbit) antibodies were from Cell Signaling Technology. Vinculin antibodies were from Sigma (V-9131 mouse); zyxin antibody B72 (Hoffman et al., 2003 (link)) is available from Millipore (#1387 rabbit). Alexa Fluor (647, 568, 488)–conjugated secondary antibodies, Alexa Fluor Phalloidin (647, 568, 488), and nuclear stains DAPI (#D-1306) and Hoechst (#H-1399) were obtained from Molecular Probes/Invitrogen. SiR-actin was obtained from Cytoskeleton (#CY-sc001). See also Supplemental Table S2, Reagents and Resources.
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