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18 protocols using gapdh

1

Protein Expression Analysis in Cells

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Extract total proteins from cells, and then the protein content was evaluated. The protein was separated by electrophoresis on a 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred to a Hybond-P polyvinylidene difluoride (PVDF) membrane. The membrane was blocked in 5% nonfat milk and incubated with Notch-1, Hes-1, Jagged-1, E-cadherin, and vimentin antibodies (1:1,000, CST, Danvers, MA, USA) 4 °C for the night. Then, incubation with the horseradish peroxidase (HRP)-conjugated secondary antibody (1:2,000, CST, Danvers, MA, USA) and leave them at room temperature for 1 hour. After washing with PBS, the bound primary antibody was visualized with the Enhanced Chemiluminescence System (Amersham, Piscataway, NJ, USA) and exposed to film. -The same approach was applied to GAPDH (Solarbio, San Diego, CA, USA) for loading control. The relative density was analyzed with the Image J software.
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2

Western Blot Analysis of Left Atrial Proteins

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Left atrial tissue was homogenized in lysis buffer containing radioimmunoprecipitation assay (RIPA) buffer and inhibitors of proteases. Protein concentrations were determined by the bicinchoninic acid (BCA) assay. Proteins were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE), with 8% gels used for endothelial nitric oxide synthase (eNOS) and Collagen I and 10% gels used for TGF-β1, Smad7, and α-SMA. The fractionated proteins were electrophoretically transferred to nitrocellulose membranes (Amersham, Piscataway, NJ, USA). The membranes were incubated with the appropriate primary antibodies for each target protein at 4°C overnight. The primary antibodies for TGF-β1 (1: 500), eNOS (1: 500), Collagen I (1: 500), and α-SMA (1: 200) were from Abcam (Cambridge, MA, USA). The Smad7 (1: 1000) primary antibody was from Aviva Systems Biology (San Diego, CA, USA). The secondary antibodies for Smad7 and eNOS were horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (Abcam), diluted 1: 5000. The secondary antibodies for TGF-β1, Collagen I, and α-SMA were HRP-conjugated goat anti-mouse IgG (Abcam), diluted 1:5000. Stained bands were visualized after incubation with HRP-conjugated secondary antibody using enhanced chemiluminescence (ECL) detection reagents (Amersham). GAPDH (1: 2500; Solarbio, Beijing, China) was used as a loading control.
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3

Western Blot Analysis of Cell Adhesion and Proliferation Markers

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The radioimmunoprecipitation assay buffer (Thermo Fisher Scientific) was used to isolate the total protein. Following quantification with bicinchoninic acid kit (Thermo Fisher Scientific), 20 μg samples were separated via sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred on the polyvinylidene fluoride membrane (Bio-Rad, Hercules, CA, USA). The membranes were blocked in 5% fat-free milk for 1 h and then incubated with primary antibodies (E-cadherin [ab40772, 1:8000; Abcam, Cambridge, UK], intercellular adhesion molecule-1 [ICAM-1] [ab109361, 1:1000; Abcam], vitronectin [ab45139, 1:2000; Abcam], proliferating cell nuclear antigen [PCNA] [ab18197, 1:5000; Abcam], matrix metalloproteinase 9 [MMP9] [ab76003, 1:5000; Abcam], AQP4 [ab81355, 1:300; Abcam], and GAPDH [1:5000; Abcam]) overnight, followed by interacting with secondary antibodies (ab6721, 1:2000; Abcam) for 2 h. Then blots were exposed to enhanced chemiluminescence (Solarbio) and detected via ImageJ v1.8, with GAPDH as a normalized control.
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4

PDRG1 Protein Expression Analysis

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After 20 mg of tissue sample was ground into powder with liquid nitrogen, pre-cooled lysate was added according to the net weight of the tissue, fully lysed, and centrifuged for supernatant. The protein concentration was detected by the BCA Kit. Subsequently, a 10 ug protein sample was loaded and transferred to a polyvinylidene fluoride membrane after SDS-PAGE. PDRG1 (Proteintech Group, 161668-1-AP) and GAPDH (Solarbio, K000026M) were incubated overnight at 4 ℃. After membrane washing, Invitrogen goat anti-rabbit IgG (H+L) secondary antibody HRP (ThermoFisher Scientific, 31460) was added and incubated for 1 h at room temperature. ImageJ software was used to process the images.
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5

Western Blot Analysis of Kidney Proteins

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Kidney tissue was added to RIPA lysate (Thermo Fisher Scientific, United States) containing phosphatase inhibitor and protease, followed by being disrupted by an ultrasound. Then, the sample was centrifuged at 14,000 g at 4°C for 15 min, and the supernatant was collected. The BCA protein detection kit (Pierce, United States) was utilized for measuring the protein concentration. 20 μg protein was loaded. After 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis, the product was transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Germany). The membrane was blocked with 5% bovine serum albumin at 37°C for 2 h, and was incubated with primary antibodies overnight at 4°C. Antibodies included EIF4B (1/10000; ab134138; Abcam, United States), RICTOR (1/1000; ab219950; Abcam, United States), PRKCB (1/2000; ab195039; Abcam, United States), and GAPDH (1/10000; ab8245; Abcam, United States). After being washed 3 times with TBST, the membrane was incubated with HRP-labeled secondary antibody (1/2000; ab7097; Abcam, United States) for 2 h at 37°C. After being washed three times, the protein expression was detected by a gel quantitative analysis system following treatment with ECL (Solarbio, Beijing, China) with GAPDH as the reference control.
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6

Protein Expression Analysis in Biological Samples

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The tissue was homogenized in RIPA buffer containing a protease inhibitor cocktail (Beyotime Biotechnology). A BCA protein assay (Beyotime Biotechnology) was used to determine the protein concentrations. Equal amounts of protein were separated by SDS-PAGE and then transferred electrophoretically to polyvinylidene fluoride membranes (Bio-Rad) [29 (link), 30 (link)]. The membranes were incubated with the following primary antibodies for 2 h at room temperature: IL-6 (1:1000, Abcam, England), Gp130 (1:1000, Santa, America), pSTAT3 (1:1000, Bioss, China), and NMDA receptors (1:1000, Bioss, China). The membranes were then incubated with GAPDH (1:1000, Solarbio, China), goat anti-mouse IgG (Bioss, China, Gp130, 1:1000 and GAD67, 1:1000) or goat anti-rabbit IgG (Bioss, China, pSTAT3, 1:1000, NMDA receptors, 1:3000 and IL-6, 1:1000) secondary antibodies for 2 h at room temperature. Finally, the membranes were placed in a gel imaging analysis system for exposure and analysis (AlphaView FluorChem FC3).
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7

Baicalin Modulates Cell Cycle and Apoptosis in Vitro

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McCoy's 5A medium, fetal bovine serum (FBS) and the cell cycle determination kit [FxCycle™ Propidium Iodide (PI)/RNase Staining solution; cat. no. F10797] were all purchased from Thermo Fisher Scientific, Inc. The mixture of penicillin and streptomycin was obtained from Hyclone; GE Healthcare Life Sciences. The Annexin V staining kit was provided by Nanjing KeyGen Biotech Co., Ltd. The Cell Counting kit-8 (CCK-8) was provided by Abbkine Scientific Co., Ltd. Baicalin and DMSO were obtained from Beijing Solarbio Science & Technology Co., Ltd. The antibodies against GAPDH (cat. no. 5174), AKT (cat. no. 4691s), phosphorylated (p)-AKT (cat. no. 4060s), cyclin D1 (cat no. 2978s), CDK4 (cat. no. 12790), Bax (cat. no. 5023) and Bcl-2 (cat. no. 15071) were all purchased from Cell Signaling Technology, Inc.
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8

Comprehensive Protein Extraction and Analysis

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The total proteins were extracted for 60 min on ice in RIPA buffer (Thermo Scientific, USA) containing protease and phosphatase inhibitors (Cell Signaling Technology, USA). Cell lysates were centrifuged at 1.2 × 104 g, 4 °C for 15 min, and the concentrations of supernatants were detected with a BCA Protein assay kit (Thermo Scientific, USA). 30 μg protein was separated by 10% SDS-PAGE (Life Technology, USA) and then transferred to 0.45 μm PVDF membranes (Millipore, USA). The membranes were incubated with monoclonal antibodies at 4 °C for 24 h. In total, primary antibodies included those for HJURP, ERK1/2, p-ERK1/2, cyclinD1, cyclinE, p-JNK, GSK3β, p-GSK3β AKT, p-AKT (Abcam, UK), LRR1 (Proteintech, China) and p21 (Cell Signaling Technology, USA). The immunoblots were detected with a visual imaging system (Bio-Rad, USA). β-actin and GAPDH (Solarbio Life Science, China) were selected as the loading controls.
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9

Western Blot Analysis of Protein Expression

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Cells were lysed in ice-cold Tris buffer (20 mM Tris; pH 7.5) containing a protease inhibitor cocktail (New Cell & Molecular Biotech Co. Ltd) and 1 mM DTT, 10% glycerol, 50 mM NaF, 2 mM ethylenediaminetetraacetic acid, 137 mM NaCl, and 1% Triton X-100 (Solarbio, Beijing, China). The extracted proteins were separated by SDS-PAGE and then electroblotted onto polyvinylidene fluoride membranes (Elabscience Biotechnology Co., Ltd.). The membranes were incubated with antibodies after blocking with NcmBlot Blocking Buffer (New Cell & Molecular Biotech Co. Ltd). Primary antibodies were as follows: YAP (CST, 14074, 1:1000), CD24 (Abways, CY10303,1:500; HUABIO, 0804-3, 1:500) and GAPDH (Solarbio, K200057M, 1:3000). The secondary antibodies were purchased from Lianke Bio and used at a 1:3000 dilution. Protein signals were detected with an ECL kit (Life-iLab, China).
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10

Protein Extraction and Western Blot Analysis

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RIPA lysis buffer (Solarbio, Beijing, China) with Protein phosphatase inhibitor (Biomed, Beijing, China) and phenylmethylsulfonyl fluoride (PMSF, Biomed) was used to extract total protein lysate. Lysates were run on 10% SDS-PAGE gels, and protein bands were transferred to 0.45μm polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA), then blocked with 5% skim milk at room temperature for 1 hour. The membrane was incubated with primary antibodies (GNA15, Novus Biologicals, Centennial, USA, 1:1000; GAPDH, Solarbio, 1:1000; p-P38 MAPK, P38 MAPK, p-CREB, CREB, p-MAPKAPK2Thr222, MAPKAPK2Thr222, p53, cleaved-PARP, cleaved-Caspase3, p27 Kip1, Cyclin D1, CDK4, p-p44/42 MAPK, p-AMPKα, p-Akt, p-Smad3, LC3A/B, Cell Signaling Technology [CST], MA, USA, 1:1000) overnight at 4°C and probed with secondary antibodies (goat anti-rabbit IgG, goat anti-mouse IgG, Solarbio, 1:1000) at room temperature for 1 hour. The immunoreactive bands were defined using Super ECL Prime (US EVERBRIGHT, Suzhou, China).
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