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16 protocols using nestin

1

Immunohistochemical Analysis of Neuronal Markers

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After 12 weeks of surgery, the rats from each group were perfused with 4% paraformaldehyde. The brains were removed and immersed in 30% sucrose in PBS overnight and sliced on a freezing microtome (30‐µm thick). Cultured cells or cryosectioned brain slices were fixed with 4% paraformaldehyde in PBS and incubated overnight at 4°C with the following primary antibodies: Nestin (1:500, rabbit, Proteintech); Tuj1 (1:500, mouse, Abcam, MA, USA); TH (1:250, rabbit, Abcam); TH (1:500, mouse, Proteintech); DA transporter (DAT, 1:500, rabbit, Abcam); CD11b/c (1:500, mouse, Abcam); and Iba‐I (1:250, rabbit, Abcam). Alexa Fluor@488, 594, and AMCA (1:250, Abcam) were used as secondary antibodies and incubated for 2 hours at room temperature. Stained samples were mounted on VECTASHIELD with DAPI mounting medium (Sigma‐Aldrich) and photographed using epifluorescence (Olympus).
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2

Characterization of Mesenchymal Stem Cell Markers

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mTSPC were grown on 20 μg/mL collagen type I-coated slides and fixed with 4% paraformaldehyde. After permeabilization and blocking with 2% bovine serum albumin/phosphate buffered saline (PBS), cells were incubated overnight at 4°C with primary antibodies against CD146 (Millipore), CD105 (R&D Systems), CD90.2, CD73, and CD44 (all Novus Biologicals), Sca-1 (Abcam), Nestin (Proteintech), Nanog (R&D Systems), Scx (Abcam), and Tnmd [3 (link)]. Then, corresponding Alexa Fluor 488-conjugated secondary antibodies and nuclear dye 4′,6-diamidino-2-phenylindole (DAPI; both Life Technology) were applied at room temperature. Photomicrographs were taken on the Observer Z1 microscope equipped with the Axiocam MRm camera (Carl Zeiss). Immunofluorescence experiments were reproduced twice or thrice independently and representative images are shown.
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3

Curcumin Regulates U251 Cell Markers

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U251 cells were transfected with miR-326 or miR-scr, and treated with or without curcumin. The cells were permeabilized in 0.1% Triton X-100 and blocked with 5% bovine serum albumin. All cells were then fixed with 4% paraformaldehyde and incubated with primary antibodies Nestin (Proteintech, 19483-1-AP) or CD133 (Proteintech, 18470-1-AP) overnight at 4°C. FITC-labeled secondary antibody (1:200 dilutions, BOSTER, BA1127) was added for 2 h at 37°C. DAPI reagent was used to stain the U251 cell nuclei. Images were acquired on a fluorescence microscope (Nikon, Japan).
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4

Western Blot Analysis of Protein Expression

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The cells were harvested in radioimmunoprecipitation assay buffer and lysed on ice. From each sample, equal amounts of protein were employed for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to PVDF membranes. After being blocked with 5% nonfat milk/TBST, the membrane was successively incubated with the appropriate primary antibody and a secondary antibody. Every incubation was followed by 3 washes with TBST. Protein signals were determined using a chemiluminescent substrate (Thermo Fisher Scientific, Waltham, MA, USA). Primary antibodies: MSH6, N-cadherin, Vimentin, E-cadherin, p-AKT, p-STAT3, p-Smad2/3, p-ERK, p-p38, p-JNK, p-p65, STAT3, Smad2/3, ERK, p38, JNK and p65 antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA); Ki67, Nestin, CD133, SOX2, Cyclin D1, Bax, Bcl-2, MMP2, MMP9, HIF1A, VEGFA, Snail, Slug, Twist, ZEB1, ZEB2, AKT, TGFB1 and β-actin antibodies were supplied by Proteintech (Wuhan, Hubei, China); CXCR4 antibody was obtained from Abcam (Shanghai, China). Secondary antibodies: horseradish peroxidase (HRP)-conjugated affinipure goat anti-mouse IgG and HRP- conjugated affinipure goat anti-rabbit IgG were purchased from Proteintech (Wuhan, Hubei, China).
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5

Antibodies for Glial Biomarkers Detection

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Antibodies for glial fibrillary acidic protein (GFAP), Nestin, and Caspase-1 were from Proteintech (Chicago, Illinois, USA). Antibodies against interleukin-1β (IL-1β), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and horseradish peroxidase conjugated antirabbit and mouse IgG were acquired from Cell Signaling Technology (Boston, Massachusetts, USA). Anti-Claudin-1 and anti-Synapsin-1 were purchased from Bioworld (Dublin, Ohio, USA), whereas anti-Occludin was from Thermofisher (USA). Anti-NLRP3 (nucleotide-binding domain-like receptor protein3) and anti-P2Y12 receptors were purchased from NOVUS (Cambridge, UK) and Abcam (Cambridge, UK), respectively.
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6

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cells using ice-cold radioimmunoprecipitation assay (RIPA) buffer (Sevenbio, Beijing, China) supplemented with protease inhibitors (10 mg/mL aprotinin, 10 mg/mL phenyl-methylsulfonyl fluoride [PMSF], and 50 mM sodium orthovanadate). The BCA protein assay kit (Beyotime Institute of Biotechnology) was used to determine the protein concentration of the supernatant. Equal amounts of protein samples (30 μg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrically transferred onto polyvinylidene difluoride (PVDF) membrane (Millipore, Shanghai, China). Non-specific binding was blocked by incubation with 5% fat-free milk in Tris-buffered saline containing 0.1% Tween-20 (TBST) at room temperature for 2 h.
The membranes were subsequently incubated with primary antibodies as follows: Nestin (1:500; Proteintech, Chicago, IL, USA), P21 (1:500; Proteintech), Cyclin D1 (1:5000; Proteintech), and GAPDH (1:3000; Affinity, Cincinnati, OH, USA) at 4 °C overnight. The membranes were washed and incubated with HRP-conjugated secondary antibodies (Sevenbio, Beijing, China), diluted at 1:3000 at room temperature for 2 h. Immunoblots were visualized using an enhanced chemiluminescence kit (ECL; Sevenbio, Beijing, China) and detected by Bio-Rad Chemi-Doc (Bio-Rad, CA, USA) and then normalized to that of GAPDH or β-actin.
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7

Immunofluorescence Staining of Neural Stem Cells

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Following the treatment, NSPCs or brain tissues were fixed using 4% paraformaldehyde at room temperature for 1h. After being blocked in 1% BSA, 5% goat serum and 0.2% Triton X-100 in PBS (PH 7.4) at 4°C for 2h, the specimens were incubated with with corresponding antibodies against against Ki67(1:1000, Abcam, UK), DCX (1:500, Abcam, UK), BrdU (1:500, Millipore, Germany), GFAP(1:500, Abcam, UK), Nestin (1:1000, Proteintech Group, Inc, US) at 4°C overnight. Then, cells were incubated with corresponding secondary antibody, goat anti-rabbit Alexa Fluor 488, goat anti-rabbit Alexa Fluor 555, goat anti-rabbit Alexa Fluor 647, Goat Anti-Rat Cy3 or anti-mouse Alexa Fluor 488 (1:200, Beyotime, China) at room temperature for 2h, followed by counterstaining with 4,6-diamidino-2-phenylindole dihydrochloride (DAPI, 2 mg/ml in PBS) for 10 min. Finally, the images were captured using a Zeiss UV 780 Meta confocal microscope (Carl Zeiss) and examined by Adobe Photoshop CS6 software.
For BrdU immunostaining, brain sections were incubated in 2N HCl at 37°C for 30min. Stained sections were rinsed using 0.1M borate solution (pH=8.5) twice for 10min, incubated in 3% H2O2 for 30 min and blocked with 5% normal goat serum at room temperature for 1h.
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8

Immunofluorescence Characterization of Stem Cells

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Cells placed on the chamber slides were fixed in
4% paraformaldehyde (PFA, Boster, China) for 15
minutes at room temperature, washed with PBS,
and permeabilized with 0.2% Triton X-100 (Sigma,
USA) in PBS (PBS-T) for 20 minutes. Cells were
incubated overnight in blocking buffer that contained
the following primary antibodies: Nanog (1:200;
Abcam, USA), SSEA4 (1:200; Abcam, USA), Nestin
(1:200; Proteintech, USA), Vimentin (1:200; Abcam,
USA), and AFP (1:200; Proteintech, USA) after
blocking with 5% fetal bovine serum for 1 hour.
Cells were rinsed and primary antibodies detected
with appropriate secondary antibodies for 1-2 hours
at room temperature in the dark. Then nuclei were
counterstained with DAPI. Images were acquired
using the Nikon fluorescence microscope and Adobe
Photoshop (Adobe Systems) software.
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9

Quantitative RT-PCR and Protein Analysis

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For qRT-PCR assays, cell and tumor tissue RNA was extracted according the manual of PrimeScript RT reagent Kit (Takara Biotechnology Co., Ltd., China) and Primers were present in Additional file 1: Table S1. The StepOnePlus Real Time PCR System (Applied Biosystems, Foster City, CA, USA) was used. The resulting data were analyzed with the comparative cycle threshold (CT) value for relative gene expression quantification relative to GAPDH.
Cell proteins were extracted using normal method [7 (link)]. After blocking, antibody against HIF-1α (Abcam, UK), Nestin, SOX2, VEGF and GAPDH (Proteintech, China), were added, respectively.
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10

Tracking Cell Migration in Wound Healing

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Wound tissues were sampled on days 3 and 17 after treatment, embedded in an optimal cutting temperature compound, frozen, and sliced into 10-µm-thick sections at − 22 °C. Sections were then treated with primary antibodies against rabbit anti-CD31 (Abcam) overnight at 4 °C, followed by a 50 min treatment with goat anti-rabbit IgG secondary antibody (Abcam) at 37 °C and 10 min treatment with 4′,6-diamidino-2-phenylindole (DAPI). The stained slides were observed under an Olympus VS200 fluorescence microscope (Japan). To visualize the migration of BMSCs and regenerated nerves in vivo, tissue sections on day 3 and 17 were stained with antibodies against CD90 (ProteinTech), nestin (ProteinTech), and β3-tubulin (Cell Signaling Technology). CD90, nestin, and β3-tubulin signals were visualized using FITC- and CY3-conjugated secondary antibodies (Thermo Pierce). Nuclei were stained with DAPI. Using a laser scanning confocal microscope (VS200, Olympus), images of the sections were obtained for three randomly selected areas for the quantification of fluorescence intensity. All images were post-processed and quantified using ImageJ software.
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