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14 protocols using ab16288

1

Immunofluorescence of Pluripotent Stem Cells

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iPS cell colonies grown were fixed in 4% paraformaldehyde, permeabilized with 0.25% Triton X-100, and blocked in 5% goat serum in PBST. Cells were incubated with primary antibody overnight at 4°C, washed with PBST, and incubated with DyLight 650 (ab98371 or ab102464; Abcam) conjugated secondary antibody. Rat monoclonal to SSEA3 (ab16286), mouse monoclonal to SSEA4 (ab16287), and mouse monoclonal to TRA-1-60 (ab16288) antibodies were supplied by Abcam, in addition to rat IgM (ab35768) and mouse IgM (ab18401) isotype controls. iPS cells were counter stained with 0.5 μg/ml DAPI and rinsed with PBS prior to fluorescence microscopic imaging.
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2

Immunostaining of Human iPSCs and EBs

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For immunostaining, human iPSCs and EBs were fixed in 4% paraformaldehyde (PFA) for 10 min at room temperature, washed with PBS, and permeabilized in 0.3% Triton X-100 in PBS for 10 min at room temperature. Primary antibodies used were anti-Oct4 (ab18976, Abcam, Cambridge, UK), anti-Nanog (ab62734, Abcam), anti-SOX2 (ab97959, Abcam), anti-TRA-1-60 (ab16288, Abcam), anti-Nestin (ab22035, Abcam), anti-α-SMA (ab5694, Abcam), anti-Brachyury (AF2085, R&D Systems, Minneapolis, MN, USA), and anti-GATA4 (ab134057, Abcam). After primary antibody incubation, samples were washed with PBS and incubated with secondary Alexa Fluor 488-conjugated antibodies (Life Technologies), diluted 1:2,000. Samples were also counterstained with DAPI (200 μg/mL). Slides were observed using an Olympus BX61 research microscope equipped with a cooled CCD camera. Images were captured and analyzed with Applied Imaging software CytoVision.
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3

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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4

Immunofluorescence Analysis of Neuronal Markers

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Mature HiNs were fixed overnight in 4% PFA, permeabilized with 1% Triton-X-100 for 5 min at room temperature, and then blocked using 6% normal goat serum at room temperature on a platform rocker for 30 min. HiNs were then incubated in primary antibody (hyperphosphorylated tau: AT8 antibody (ThermoFisher (MN1020) 1:1000), TRA-160 (Abcam (ab16288) 1:200), TRA-181 (Abcam (ab16289) 1:200) overnight at 4 °C on a platform rocker. Neurons were then rinsed 3x in 1xPBS, and incubated in secondary antibody (Alexafluor 594, ThermoFisher 1:1000) at room temperature on a platform rocker for two hours. Fluorescent images were then collected using a 20× air objective using a Nikon Eclipse TE 2000-S microscope (Melville, NY, USA) with an XCite series 120 PC illumination source, captured with Nikon Elements software (AR package, Melville, NY, USA). Data are presented as mean fluorescent intensity in randomly selected ROI in each representative image.
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5

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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6

Stem Cell Characterization via Immunostaining

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To determine stem cell characteristics, we performed staining for pluripotent and cell surface markers. Cells were fixed in 4% paraformaldehyde (w/v) and permeabilized in PBS containing 0.2% Triton X-100 for 20 min at room temperature. After subsequent washes in PBS, embryos were blocked for 30 min at room temperature. Slides were incubated separately with TRA-1-60 (1:200, ab16288, Abcam, UK) and Oct4 (1:200, ab27985, Abcam, UK) antibodies overnight at 4 °C, followed by fluorescein isothiocyanate-conjugated goat anti-mouse or anti-rabbit secondary antibodies (1:200) for 1 h at 37 °C and re-washing in PBS. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) at a final concentration of 0.01 mg/ml for 5 min. Immunostained embryos were mounted on glass slides and examined under a confocal laser-scanning microscope (A1-R, NIKON, Japan).
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7

Pluripotency Validation of hiPSCs

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All cells maintained in monolayer cultures were fixed with 4% paraformaldehyde for 10 min at room temperature. The pluripotency of the derived hiPSCs was tested by immunocytochemical staining for OCT4 (Abcam, Cambridge, United Kingdom; ab27985, RRID:AB_776898), NANOG (R and D Systems, AF1997, RRID:AB_355097), TRA-1–60 (Abcam, ab16288, RRID:AB_778563) and TRA-2–49 (Developmental Studies Hybridoma Bank, TRA-2-49/6E, RRID:AB_528071). The secondary antibodies were goat anti-rabbit IgG conjugated with Alexa-488 (Invitrogen, Carlsbad, California; A-11034, RRID:AB_2576217) and goat anti-mouse IgG conjugated with Alexa-488 (Invitrogen, A-11011, RRID:AB_2534069).
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8

Antibody Profiling for Stem Cell Characterization

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The following antibodies were used: goat antibody against human VE-cadherin (1:1,000, AF938; R&D systems); rabbit antibody against human GCN2 (1:1,000; ab134053; Abcam); rabbit antibody against human NANOG (1:500; ab109250; Abcam); rabbit antibody against human OCT4 (1:500; ab200834; Abcam); mouse antibody against human SSEA-1 (1:500; ab16285; Abcam); mouse antibody against human TRA-1 (1:500; ab16288; Abcam); rabbit antibody against phospho-Akt (Ser473) (1:1,000; 31957; Cell Signaling); rabbit antibody against Akt (pan) (1:2,000; 4691; Cell Signaling); Ki67 rabbit monoclonal antibody (1:200; AF1738, Beyotime); Alexa Fluor 488-conjugated donkey anti-rabbit IgG (1:1,000; R37118; Life Technologies); Ficoll-Paque PREMIUM sterile solution (17544202; GE Healthcare); CytoTune-iPS 2.0 Sendai Reprogramming Kit (A16517; Thermo Fisher Scientific); Matrigel (354277; BD); mTeSR medium (05850; STEMCELL Technologies); Y-27632 (STEMCELL Technologies); Accutase (07920; STEMCELL Technologies); MTT for cell proliferation detection (C0009S; Beyotime).
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9

Immunostaining of Neurons and Stem Cells

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Cells were fixed with cold 4% PFA, 4% sucrose in PBS for 10–15 min. For EB2 staining, neurons were fixed with methanol supplemented with 1 mM EGTA for 5 min at −20°C, followed by 5 min of 4% PFA, 4% sucrose based on Jaworski et al Mouse neurons were blocked and permeabilized with 0.2% Triton X‐100/10% normal goat serum in PBS for 60 min at RT. Human cells were treated the same with 0.1% Triton X‐100/3% BSA in PBS. In blocking buffer, the following primary antibodies were incubated o/n at 4°C: mouse anti‐MAP2 (1:1,000, Sigma M9942), rat anti‐EB2 (1:1,000, Abcam ab45767), rabbit anti‐EB2 pS222 (1:1,000), rabbit anti‐MAP1S LC (1:500, Sigma HPA050934), rabbit anti‐OCT4 (1:500, Abcam ab19857) and mouse anti‐TRA‐1‐60 (1:250, Abcam ab16288). After three 5‐min washes with PBS, 1:500 secondary antibodies in PBS were incubated for 2 h at RT and washed three times again with one containing 1:2,000 DAPI stain (Thermo Scientific). Coverslips were mounted with Fluoromount‐G (Southern Biotech) or Prolong Gold Antifade (Invitrogen) on glass slides.
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10

Immunostaining of Pluripotency Markers

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Cells were grown on Matrigel-coated glass cover slips (13 mm; Marienfeld) in 24-well plates, fixed with 4% paraformaldehyde, and incubated in blocking solution (2.5% BSA) with 0.1% Triton X-100 to enable staining of intracellular markers. Cells were incubated with primary antibody for 1 hr. at RT, washed and incubated with secondary antibodies for 1 hr. at RT, counterstained with DAPI for nuclear staining, and imaged using an Olympus IX51 inverted light microscope. The following antibodies were used at the indicated dilutions: mouse anti-OCT4 (sc-5279, Santa-Cruz, 1:60), mouse anti-SSEA4 (CST-4755S, cell signaling technology, 1:200), mouse anti-TRA-1-60 (ab16288, Abcam, 1:200) and rabbit anti-TFE3 (HPA023881, Sigma-Aldrich, 1:60).
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