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50 protocols using phospho β catenin

1

Immunoblotting of KPT-9274 Treated Cells

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Immunoblotting was performed as previously described42 . Briefly, cells were treated with various concentrations of KPT-9274 (0.625, 2.5, and 10 μM) for 24 h and lysed with RIPA lysis buffer (Thermo Scientific) before immunoblotting. Tissues were homogenized in T-PER buffer (Thermo Scientific). Membranes were blocked in 5% BSA or Odyssey Blocking buffer (LI-COR) for one hour at room temperature and probed with appropriate primary and secondary antibodies. Signal was detected with ECL using the Fuji Imager or with fluorescent secondary antibodies (LI-COR) using Odyssey. β-catenin, phospho-β-catenin, PAK4, phospho-PAK4 and vinculin antibodies were from Cell Signaling and probed at 1:1000. β-actin (Sigma) was probed at 1:4000, NAMPT (Bethyl Laboratories) was probed at 1:2000, and NAPRT1 (Proteintech) was probed at 1:2000. Image J (https://imagej.nih.gov/) was used to measure densitometry.
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2

SARS-CoV-2 N Protein Expression and Antibody Validation

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The SARS-CoV-2 N gene was PCR-amplified from cDNA derived from the isolate SARS-CoV-2/human/USA/CA-CZB017/2020 (GenBank MT385497.1), nucleotides 28254 to 29513, and cloned into pCS2MT in frame with five N-terminal myc epitope tags (https://www.addgene.org/153201/). Priming site mutations were generated by site-directed mutagenesis to modify serine-188 and serine-206 to alanine based on prior observations with SARS-CoV-1 (8 (link)). Antibodies to the SARS-CoV-2 N protein were purchased from Invitrogen (#PA1-41386). Antibodies from Cell Signaling included phospho-Glycogen Synthase (#3891), phospho-S6 (#4858), β-catenin (#9562), phospho-β-catenin (#9561), GAPDH (#2118), PKCα (#2056), PKCδ (#2058), PKCε (#2683), Myc-tag (#2276), and phospho (Ser) substrate (#2261). Other antibodies included antibodies to GSK-3 (Calbiochem #368662), Tau (T14/46 antibodies provided by Virginia Lee, University of Pennsylvania, Philadelphia, PA), and β-actin (Sigma #A5441). Monoclonal anti–SARS-CoV S Protein (similar to 240C) was obtained through BEI Resources, National Institute of Allergy and Infectious Diseases, NIH (NR-616).
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3

Co-Immunoprecipitation and Western Blot Analysis

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IgG, HA, and GSK3β were added into lysis buffer gained from cells and incubated overnight at 4℃ with shaking. Then we mixed mix protein A/G PLUS‐agarose (Beyotime) and cell lysates and incubated with shaking for 2 h. Lysis buffer was used to wash the agarose beads for 3 times. The final cell lysates were separated by Western blotting. Total proteins were obtained using RIPA buffer (Beyotime) and separated on 8%–12% SDS‐PAGE. According to previous study,27 the PVDF membranes were probed by antibodies. The antibodies were listed as follow: β‐catenin (66379–1‐Ig, Proteintech, 1:1,000), Phospho‐β‐catenin (#9561, Cell Signaling Technology, 1:1,000), GSK3β (67329–1‐Ig, Proteintech, 1:1,000), HA tag (#5017, Cell Signaling Technology, 1:1,000), Vimentin (ab92547, Abcam, 1:1,000), E‐cadherin (ab40772, Abcam, 1:1,000), and β‐actin (AA128, Beyotime, 1:1,000). The expression levels were developed under enhanced chemiluminescence (ECL, Millipore).
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4

Investigating Wnt Signaling in EPSCs

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To investigate Wnt signalling in EPSCs, 1.0 × 106 cells were seeded in M15, N2B27-2i/LIF, KSR-2i/LIF and EPSCM for 48 h. Cytoplasmic and nuclear proteins were extracted with a NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo Scientific) for western blot to detect phospho-β-catenin (Cell Signaling), β-catenin (Sigma) and active-β-catenin (Millipore). α-Tubulin (Abcam) and histone H3 were used as loading controls for cytoplasmic and nuclear protein, respectively. For the TOPflash assay, 2.0 × 106 cells were co-transfected with 20 μg TOPflash and 2 μg pRL-TK by Nucleofection (Amaxa). Cells were split 1:9 into a 24-well plate in M15and N2B27-2i/LIF and EPSCM for 48 h. Cell lysates were prepared for luciferase assay. Antibodies used are listed in Supplementary Table 7.
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5

Signaling Pathway Analysis Protocol

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Western blot, cell fractionation and Co-IP analysis were carried out as described in our previous publications.23 (link),26 (link),29 (link) The following primary antibodies were used: anti-ITGA9, anti-CD31 (Abcam, Cambridge, MA); anti-β-catenin, anti-non-phospho-β-catenin, phospho-β-catenin (Ser33/37/Thr41, Thr41/Ser45, Ser675), phospho-GSK3α (Ser21), phospho-GSK3β (Ser9), total GSK3α, total GSK3β, phosphor-CREB (Ser133), total CREB, integrin-linked kinase (ILK), PKA-Cα, and PARP-1 (Cell Signaling Technology, Beverly, MA); anti-PKA RIIα regulatory unit (Santa Cruz Biotechnology, Dallas, TX); anti-β-actin (Sigma, St. Louis, MO).
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6

Protein Expression Analysis in 3-DSC Treated Cells

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Cells treated with 3-DSC (0–3 μM) for 48 h in a serum free medium were homogenized with a cell lysis buffer (100 mM Tris pH 7.5, 150 mM NaCl, 5 mM EDTA, 1% Triton X-100, 5 mM DTT, 0.1 mM PMSF, 10% Glycerol, protease inhibitor) and lysed with 2 h incubation on ice. The cell lysate was centrifuged at 13,000 rpm for 15 min at 4°C. Equal amounts of proteins (20 μg) were separated on a SDS/8%-polyacrylamide gel, and then transferred to a polyvinylidene difluoride (PVDF) membrane (Thermo Scientific). Blots were blocked for 1 h at room temperature with 5% (w/v) non-fat dried milk in Tris-Buffered Saline Tween-20 [TBS-T: 10 mM Tris (pH 8.0) and 150 mM NaCl solution containing 0.05% Tween-20]. After a short washing in TBST, the membranes were immunoblotted with specific antibodies. To detect target proteins, specific antibodies against stat3, stat6, phospho-stat3, phospho-stat6, β-catenin, phospho-β-catenin (1:1000, Cell Signaling Technology) and β-actin (1:5000, Sigma-Aldrich) were used. The blots were then incubated with the corresponding conjugated goat anti-rabbit or goat anti-mouse or donkey anti-goat IgG-horse-radish peroxidase (HRP) (1:5000; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) secondary antibodies. Immunoreactive proteins were detected with an enhanced chemiluminescence western blotting detection system (myECL imager, Thermo Scientific).
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7

Investigating Cellular Signaling Pathways

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PTEN (138G6) Rabbit Monoclonal antibody, Phospho-cdc2 (Tyr15) antibody, Phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) Rabbit Monoclonal antibody, p44/42 MAPK (Erk1/2) Rabbit Monoclonal antibody, Phospho-β-Catenin (Ser33/37/Thr41) antibody, Total-β-Catenin antibody, Phospho-c-Myc (Ser62) Rabbit Monoclonal antibody, p53 Rabbit Monoclonal antibody, Non-phospho (Active) β-Catenin (Ser33/37/Thr41) Rabbit Monoclonal antibody were obtained from Cell Signaling Technology (CST). Mouse anti-human C-myc monoclonal antibody, anti-MMP-9 antibody were obtained from Millipore.
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8

Western Blot Analysis of Protein Markers

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The cells were harvested with the 1X sample buffer (Biosesang, Seongnam, GG, Korea) containing a protease inhibitor and phosphatase inhibitor cocktail (GenDepot). Then, the total cell lysates were sonicated for 30 s and heated to 100 °C for 10 min. The proteins were separated on 8% polyacrylamide gels followed by transfer onto polyvinylidene difluoride (PVDF) membranes (Merck Millipore, Burlington, MA, USA). ICAM-1 (Santa Cruz Biotechnology Inc.), HMOX-1 (Santa Cruz Biotechnology Inc.), phospho-β-catenin (Ser552; Cell Signaling Technology, Danvers, MA, USA), β-catenin (Santa Cruz Biotechnology Inc.), and β-actin (Santa Cruz Biotechnology Inc.) were used at 1/2000 dilutions.
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9

Quantitative Analysis of Cellular Signaling Pathways

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Real-time PCR analysis was performed with probe sets Stk11 (Mm00488473_g1), Hdc (Mm00456104_m1), Ctnnb1 (Mm00483039_m1), and Actb (Mm00607939_s1) (all from ThermoFisher Scientific). Immunoblots were performed and quantified as described previously34 (link), using the following antibodies: phospho-LKB1 (Ser428; C67A3), LKB1 (D60C5), β-catenin (D10A8), phospho-β-catenin (Ser33/37/Thr41), phospho-S6 (Ser235/236; D57.2.2E), phospho-AKT (Ser473; D9E), phospho-FOXO1 (Ser256), phospho-AMPK (Thr172) (all from Cell Signaling Technology), and β-ACTIN (Sigma).
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10

Western Blot Analysis of EMT Markers

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Cell lysates were separated by 10% SDS-PAGE and transferred into polyvinylidene difluoride (PVDF) membranes (Millipore), which were incubated with antibodies specific to Kindlin-2 (MAB2617, Millipore; dilution 1:3000), E-cadherin (ab40772, Abcam, Cambridge, UK; 1:10,000), N-cadherin (ab76011, Abcam; 1:5000), Vimentin (5741, Cell Signaling Technology, Danvers, MA, USA; 1:1000), Snail (3879, Cell Signaling Technology; 1:1000), β-catenin (8480, Cell Signaling Technology; 1:1000), phospho-β-catenin (9561, Cell Signaling Technology; 1:1000), non-phospho-β-catenin (8814, Cell Signaling Technology; 1:1000), Axin2 (ab109307, Abcam; 1:1000), MMP7 (ab205525, Abcam; 1:1000) and GAPDH (ab8245, Abcam; 1:5000) overnight at 4 °C, followed by incubation with HRP-conjugated goat anti-mouse IgG antibody. Blots were visualized using an enhanced chemiluminescence kit and detected using QuantityOne software (Bio-Rad, Hercules, CA, USA).
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