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15 protocols using hplc grade water

1

Quantitative Analysis of Cysteine Compounds

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The following chemicals, reagents, and instruments were used: primary HPLC–MS/MS instrumentation (Agilent Technologies, Inc); polar column (Phenomenex, Inc.); analytical balance (Shimadzu Corporation); vortex mixer (Thermo Fisher Scientific); centrifuge (Restek Corporation); pipettors (Globe Scientific); high-performance liquid chromatography (HPLC)–grade water, acetonitrile, isopropanol, and methanol (Honeywell International, Inc.); formic acid and ammonium formate (Supelco); autosampler vials (Shimadzu Corporation); L-cystine (Sigma-Aldrich); R-Cysteine-R-Tiopronin (Travere Therapeutics, Inc.); DL-cystine-2,2′,3,3,3′,3′-d6 (C/D/N Isotopes Inc.); and cotinine-d3 0.1 mg/mL in methanol (NGX).
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2

Proteomic Sample Preparation Protocol

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Trifluoroacetic acid (TFA), ammonium bicarbonate, trypsin from porcine pancreas (Proteomics Grade, BioReagent, Dimethylated), dithiothreitol (DTT), iodoacetamide (IAA), and formic acid (FA) were purchased from Sigma-Aldrich (Sigma-Aldrich Chemie Gmbh, Buchs, Switzerland). HPLC-grade water, acetonitrile (ACN), ethanol, and toluene were purchased from Honeywell (Honeywell Research Chemicals Riedel-de-Haën™, Seelze, Germany). RapiGest SF surfactant was purchased from Waters Corporation (Waters, Milford, MA, USA). ZipTips were purchased from EMD Millipore (Billerica, MA, USA).
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3

Quantification of Capmatinib Metabolism

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Capmatinib (purity 98.0%) was purchased from Cayman (Ann Arbor, MI, USA); warfarin (internal standard for the analysis of the in vivo samples) was purchased from Sigma-Aldrich (St. Louis, MO, USA); and naproxen (internal standard for the in vitro study) was kindly supplied as a gift from Hikma Pharmaceuticals (Amman, Jordan). HPLC grade acetonitrile, methanol, ammonium acetate, ammonium formate, and formic acid were purchased from Fisher Scientific (Waltham, MA, USA). HPLC-grade water was purchased from Honeywell (Charlotte, NC, USA). Nuclease-free water was obtained from Integrated DNA Technologies (Coralville, IA, USA). NADPH regenerating system solution A, NADPH regenerating system solution B, HLMs, and 0.5 M phosphate buffer were obtained from Corning (Ann Arbor, MI, USA).
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4

Isolation and Identification of Phytochemicals

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6,8-Dimethoxycoumarin, tomentin, and diosmetin were isolated from L. chinensis by column chromatography and used as reference standards. Their structures were confirmed by nuclear magnetic resonance (NMR) [46 (link),47 ,48 (link)], and their purities by HPLC (≥98.0%). Other reference standards, namely, diosmin (≥98.0%) and linarin (≥98.0%), were purchased from ChemFaces Biochemical Co., Ltd. (Wuhan, China). HPLC-grade water, acetonitrile, and methanol were purchased from Honeywell Burdick and Jackson (Muskegon, MI, USA). Formic acid was from DAEJUNG Chemicals & Metals Co., Ltd. (Siheung-si, Korea).
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5

Quantification of Bioactive Compounds

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Four reference compounds, NCGA, CGA, CCGA, and rutin, were purchased from ChemFaces (Wuhan, Hubei, China). HPLC-grade water, acetonitrile, and analytical-grade phosphoric acid were acquired from Honeywell (Republic of Korea).
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6

Quantification of Imidacloprid and Metabolites

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IMI (N-[1-[(6-Chloro-3-pyridyl)methyl]-4,5-dihydroimidazol-2-yl]nitramide) and [13C6]-IMI (>99% isotopic purity; >97% total purity) were obtained from AK Scientific (Union City, CA, USA) and IsoSciences (King of Prussia, PA, USA), respectively. Authentic standards of IMI-Ole (N-[1-[(6-chloro-3-pyridyl)methyl]-1,3-dihydro-2H-imi-dazol-2-ylidene]nitramide) and IMI-5-OH (N-(1-[(6-chloro-3-pyridyl)methyl]-5-hydroxyimidazolidin-2-ylidene]nitramide) were provided by Bayer CropScience AG (Monheim, Germany). Sucrose was obtained from Chem-Supply (Gillman, SA, Australia) and glacial formic acid from AnalaR (supplied by BDH, Poole, Great Britain). HPLC grade acetonitrile, ethyl acetate,and HPLC grade methanol were obtained from Merck (Kenilworth, NJ, U.S.A.). 18.2 M ℧ HPLC grade water was obtained from Honeywell (Morristown, NJ, USA).
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7

Certified Mycotoxin Standards Acquisition

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Certified mycotoxin standards were purchased as follows: AOH from Alternaria sp. (purity >96%), AME from Alternaria alternata (>98%), TeA copper salt from Alternaria alternata (>98%), and TEN from Alternaria tenuis (>95%) were obtained from Sigma-Aldrich (St. Louis, MO, USA); ALT (>98%) was purchased from ChemFaces (Wuhan, China), and ATX- I (>97%) was obtained from Cayman (Ann Arbor, MI, USA). All mycotoxin standards were prepared at 1 mg/mL in acetonitrile (ACN) and kept at −20 °C. HPLC-grade water, ACN, and methanol (MeOH) from Honeywell Burdick and Jackson (Muskegon, MI, USA) were used for sample preparation. LC/MS-grade water and methanol from Fisher Scientific (Cleveland, OH, USA) were used as the mobile phase. LC/MS-grade ammonium acetate was purchased from Merck (Darmstadt, Germany) and glacial acetic acid (≥99.7%, HPLC grade) for pH adjustment was obtained from Fisher Scientific (Cleveland, OH, USA).
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8

Quantification of PFAS in Exposure Solutions

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PFOS (CAS: 1763-23-1, 97% purity, Santa Cruz Biotechnology, Dallas, TX, USA), PFOA (CAS: 335-67-1, 95% purity, Millipore Sigma, St. Louis, MO, USA), PFHxA (CAS: 307-24-4, 97% purity, Toronto Research Chemicals, North York, ON, Canada), and PFBA (CAS: 375-22-4, 98% purity, Millipore Sigma, St. Louis, MO, USA) were dissolved in deionized (DI) water and stored at room temperature in a dark environment. Optima-grade methanol (Fisher Chemical, Pittsburgh, PA, USA), HPLC-grade water (Honeywell Burdick and Jackson, Muskegon, MI, USA), and ammonium acetate (Thermo Scientific, Waltham, MA, USA) were used for chromatographic analyses of PFAS in exposure solutions.
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9

HPLC and ICP-OES Analysis of Disinfectant Compounds

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U.S. Pharmacopeia (USP) reference standards for citric acid (CA, ≥99% purity), malic acid (MA, ≥99% purity), acetic acid (AA, ≥99% purity), glutaraldehyde (GLT, Grade I, 25% in H2O), and formaldehyde (FAL, 37% stabilized with methanol) were used for high-performance liquid chromatography (HPLC) analysis. A phosphorus standard solution (1,000 mg/L) was purchased from Sigma–Aldrich (St. Louis, MO, United States) for inductively coupled plasma optical emission spectroscopy (ICP-OES). HPLC-grade water was obtained from Honeywell Burdick and Jackson (Morristown, NJ, United States). For the titration method validation, potassium peroxymonosulfate (PPMS, 99% purity), hydrogen peroxide (H2O2, 35% in H2O), and GLT (Grade I, 25% in H2O) were purchased from Sigma–Aldrich, and other active ingredients were obtained from the manufacturers. The standard solutions of quaternary ammonium compounds (QACs), sodium hypochlorite (NaOCl, 5.50% available chlorine), and copper sulfate pentahydrate (CuSO4.5H2O, 99.6% purity) were provided by the manufacturers. The QACs of didecyl dimethyl ammonium chloride (DDAC), alkyl dimethyl benzyl ammonium chloride (ADBAC), and coco dimethyl benzyl ammonium chloride (CDBAC) were of 81%, 50.58%, and 50.12% purity, respectively. All other reagents were of analytical grade.
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10

Metabolomic Analysis of Apoptotic Cell Uptake

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Jurkat cells were cultured for four days in arginine-depleted DMEM/10% FBS containing 84 μg/mL 13C6-arginine and 500 μM nor-NOHA. Jurkat cells were then made apoptotic, as stated above, and labeled with PKH67. These ACs were then added to IL-4-treated macrophages for 45 min. Macrophages were then vigorously rinsed with PBS three times to remove unbound ACs. After a 2 h incubation period, macrophages were detached and sorted into PKH67 and PKH67+ populations. Metabolites from cell culture samples were then extracted with 0.5 mL of 80% methanol (−80°C) followed by vortexing and incubation on dry ice for 20 min. Insoluble material was pelleted by centrifugation at 14,000 × g for 5 min at 4°C, and the supernatant containing extracted metabolites was transferred to a clean tube. There were two additional extractions of the pellet were performed using the same procedure. The 1.5 mL total metabolite extract from the pooled supernatants was dried in a vacuum centrifuge (Savant SC210A SpeedVac Concentrator, Thermo Scientific) and resuspended in 20 μL of HPLC grade water (Burdick & Jackson, Honeywell, Muskegon, MI).
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