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19 protocols using pvdf membrane

1

Western Blot Protein Analysis

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Cells were harvested and lysed with RIPA buffer (Cell signaling, 9806) in ice for 30 min and centrifuged at 12000× g for 10 min. Supernatant was collected and protein concentration was measured using BCA method (Thermo Fisher Scientific). Protein samples were boiled in 1x NuPAGE LDS sample buffer (Invitrogen) at 70℃ for 10 min. Twenty microgram protein samples were subjected to 7.5% - 15% gradient SDS-PAGE gel and transferred to PVDF membrane (MACHEREY-NAGEL, Germany). The membranes were blocked in 1x Roti-Block (Carlroth, Germany) at room temperature for 1 h and were then probed with specific primary antibodies overnight at 4°C. Blots were incubated with HRP-conjugated secondary antibody (Invitrogen, 31430 and 31460) for 1 h at room temperature. Bands were visualized by SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific, USA) and detected using the ChemoStar ECL Imager (Intas Science Imaging, Germany).
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2

VO(hntdtsc)NPIP Cytotoxicity Pathway Analysis

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Protein preparation and western blotting analysis were performed using standard methods. HeLa cells were inoculated into 6-well plates at a density of 1 ×105 cells per well and incubated at 37 °C with 5% CO2 for 24 h. VO(hntdtsc)NPIP at final concentrations of 0, 0.5, 1.0, and 2.0 μM were added to each well. After incubation for 24 h, the cells were digested with 0.25% trypsin and centrifuged for 5 min at 2000 rpm, then rinsed twice with ice-cold PBS, and lysed in 100.0 μl RIPA lysis buffer (Solarbio, R0010, China) containing 10% protease inhibitor for 30 min at 4 °C. The protein concentrations were determined by BCA protein assay kit (Solarbio, PC0020, China). Then, protein extracts (30 μg) were resolved in 8%–10% SDS-PAGE (SDS-PAGE; Bio-Rad, Hercules, CA, United States) and transferred to a polyvinylidene difluoride (PVDF) membrane (Macherey-Nagel). Subsequently, the PVDF membranes were blocked in 5% nofat milk for 1 h and incubated with primary antibodies Bax, Bcl-2, cytochrome c, cleaved caspase-3, cleaved caspase-8, cleaved caspase-9, p16, cyclin D1, CDK4, p-Rb, and β-actin with gentle rotation overnight at 4 °C and were next incubated with the secondary antibody consisting of horseradish peroxidase (HRP) conjugated for 2 h. The enhanced chemiluminescent (NEN Life Science Products, Boston, MA, USA) detection system was used for immunoblot protein detection.
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3

Protein Extraction and Western Blotting

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Cells grown in confluent monolayers were rinsed twice with cold PBS, re-suspended in lysis buffer (1% Triton X-100; 50 mM Tris pH 7,5; 150 mM NaCl; 0.5% Nonidet P-40) containing the cocktail of protease inhibitors (Roche) and cleared by centrifugation. Proteins were quantified using the BCA protein assay (Pierce). Protein extracts (100 μg/lane) were resolved in 10% SDS-PAGE and transferred to a PVDF membrane (Macherey-Nagel). The proteins were detected with appropriate antibodies and visualized using an enhanced chemiluminescence kit (GE Healthcare Bio-Science). Far Western blotting was performed as described in the legend to the Supplemental Figure S1 according to [55 (link)].
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4

Protein Extraction and Western Blot

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Cells were rinsed twice with PBS, resuspended in ice-cold lysis buffer (0.1% deoxycholic acid, 1% Triton X-100 in PBS) containing a protease (Roche, Basel, Switzerland) and phosphatase inhibitors cocktail (Sigma Aldrich, Saint-Louis, MO, USA) and cleared by centrifugation. Protein concentrations were quantified using the BCA protein assay reagents (Pierce, Waltham, MA, USA). The extracts (40 µg/lane) were resolved in 10% SDS-PAGE and transferred to a PVDF membrane (Macherey-Nagel, Düren, Germany). Protein bands were visualized using an enhanced chemiluminescence kit (GE Healthcare Bio-Sciences, Chicago, Illinois).
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5

Western Blot Protein Detection Protocol

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Twenty microgram protein samples were electrophoresed on a 7.5–15% gradient SDS-PAGE gel (Tris-Glycine, self-made) and transferred to PVDF membrane (MACHEREY-NAGEL, Dueren, Germany) by semi-dry electroblotting (Bio-Rad, Singapore). The membranes were blocked for 1 h in 1× Roti-Block (Carl Roth, Karlsruhe, Germany) at RT and then incubated with specific primary antibodies at 4 °C overnight. Proteins were detected after incubation with HRP-conjugated secondary antibody (Invitrogen, 31430 and 31460) for 1 h at RT and visualized with SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and detected by ChemoStar ECL Imager (Intas Science Imaging, Göttingen, Germany).
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6

Western Blot Analysis of Anti-MOG Antibodies

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Total protein lysate was isolated from NPC neurospheres and from naive adult mouse spinal cord (details in Additional file 1).Twenty to thirty micrograms of lysates were diluted in loading buffer and were subjected to SDS-PAGE, transferred onto PVDF membrane (Macherey-Nagel, GmbH&Co, Germany), cut into 2-mm strips, and incubated with EAE-AS, CFA-AS, NAIVE-AS (negative control), and goat anti-MOG (polyclonal antibody, positive control, R&D Systems, Minneapolis, Minnesota, USA) overnight at 4 °C. Membranes were washed with PBS supplemented with 0.1%Tween 20 (PBST) and incubated with HRP-conjugated anti-mouse IgG (Cell Signaling Technology, Leiden, The Netherlands) for 1 h in room temperature. Immunoreactivity was visualized by enhanced chemiluminescence (ECL, GenScript, New Jersey, USA). Membranes were stripped and incubated with anti-actin antibody (Cell Signaling Technology, Leiden, The Netherlands) to verify equal loading of samples onto the gel.
Recombinant MOG (R&D Systems, Minneapolis, Minnesota, USA) was blotted and it was detected by anti-MOG and EAE-AS and served as a positive control for the existence of anti-MOG immunoglobulins within EAE-AS.
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7

Cell Lysis and Protein Extraction

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Cells grown in confluent monolayers were rinsed twice with PBS, resuspended in ice-cold lysis buffer (1% Triton X-100; 50 mM Tris pH7.5; 150 mM NaCl; 0.5% Nonidet P-40) containing protease (Roche) and phosphatase inhibitors cocktail (Sigma Aldrich), disrupted by sonication and cleared by centrifugation. Protein concentrations were quantified using the BCA protein assay reagents (Pierce). The extracts (100 μg/lane) were resolved in 8% SDS-PAGE and transferred to a PVDF membrane (Macherey-Nagel). Protein bands were visualised using an enhanced chemiluminescence kit (GE Healthcare Bio-Sciences) and quantified in ImageJ software (using Analyze-Gels). All results were normalised to actin.
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8

Western Blot Analysis of CA IX, HIF-1α, and Actin

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For western blotting (WB), cells grown in confluent monolayers were rinsed twice with cold PBS, resuspended in ice-cold lysis buffer (1% Triton X-100; 50 mM Tris pH 7,5; 150 mM NaCl; 0,5% Nonidet P-40) containing protease (Roche) and phosphatase inhibitors cocktail (Sigma Aldrich), disrupted by sonication and cleared by centrifugation. Protein concentrations were quantified using the BCA protein assay reagents (Pierce). Protein extracts (100 μg/lane) were resolved in 8% SDS-PAGE and transferred to a polyvinylidene difluoride (PVDF) membrane (Macherey-Nagel). The total level of CA IX protein was detected by HRP-conjugated M75 antibody, and HIF-1α and actin were detected using purified primary antibodies and the appropriate HRP-conjugated secondary antibodies as described in the section Antibodies. Protein bands were visualized using an enhanced chemiluminescence kit (GE Healthcare Bio-Sciences).
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9

Semi-Quantitative Analysis of VEGFR2 Expression

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The basal expression level of VEGFR2 was determined semi-quantitatively. The HUVECs were harvested to extract total protein for a bicinchoninic acid protein assay (Thermo Fisher Scientific, Inc.) and 30-60 ng protein was used for western blotting. The samples were separated on 8% SDS-PAGE gels and transferred onto a PVDF membrane (Macherey-Nagel) via semi-dry blotting. The membranes were blocked with 5% skim milk (Bio-Rad Laboratories, Inc.) in Tris-buffered saline with 0.1% Tween (TBS-T) or 3% bovine serum albumin (Sigma-Aldrich; Merck KGaA) and stained with either anti-VEGFR2 antibody (cat. no. sc-505, 1:500, Santa Cruz Biotechnology, Inc.) in 2.5% skim milk, or anti-vinculin antibody (cat. no. sc-25336, 1:500, Santa Cruz Biotechnology, Inc.) in TBS-T at 4°C overnight. The secondary antibodies anti-rabbit (cat. no. RPN4301, 1:10,000) and anti-mouse (cat. no. NX931, 1:50,000) coupled to horseradish peroxidase (Amersham; GE Healthcare Life Sciences) were incubated for 2 h at room temperature. The signals were detected with ECL-Prime (GE Healthcare Life Sciences) using ChemiDoc XRS (Bio-Rad Laboratories, Inc.). The expression levels of VEGFR2 were semi-quantitatively analyzed using ImageLab® 5.1 software (Bio-Rad Laboratories, Inc.) with vinculin as a loading control.
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10

Protein Extraction and Western Blot Analysis

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Protein extracts were prepared using lysis buffer (1% Triton X-100; 50 mM Tris pH 7.5; 150 mM NaCl; 0.5% Nonidet P-40) containing protease (Roche) and phosphatase inhibitor cocktail (Sigma-Aldrich), disrupted by sonication and cleared by centrifugation. Concentrations were quantified using the BCA protein assay kit (Pierce). A total of 100 μg of proteins/lane were resolved in 8% SDS-PAGE, transferred to a PVDF membrane (Macherey-Nagel, Düren, Germany) and visualized using an enhanced chemiluminescence kit (GE Healthcare Life Sciences). Protein bands were quantified in ImageJ software, all results were normalized to actin. Antibodies used for specific proteins were as follows: HIF-1α (dilution 1:250, 610959; BD Transduction Laboratories, San Jose, CA, USA), CA IX (in-house generated M75, dilution 1:3), actin (dilution 1:1,000, sc1615; Santa Cruz Biotechnology, Santa Cruz, CA, USA), NF-κB1-p105/p50 (dilution 1:1,000, 13586; Cell Signaling Technology, Danvers, MA, USA), appropriate secondary antibodies conjugated with horseradish peroxidase were purchased from Dako.
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