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Dm ire2 confocal microscope

Manufactured by Leica
Sourced in Germany, United States

The Leica DM IRE2 is a confocal microscope designed for high-resolution imaging. It features a motorized stage and automated image acquisition capabilities. The DM IRE2 is capable of producing detailed, optical sections of a sample through the use of a confocal pinhole.

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35 protocols using dm ire2 confocal microscope

1

Fluorescence Visualization of LIN-LPN Internalization in Osteoblasts

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To examine if LIN-LPN could be internalized by osteoblasts, LPNs were labeled with 0.25% DPPE-lissamine rhodamine B (by weight of their lipid content). We performed size measurements (as in 2.3), MTT assay (using MC3T3-E1 osteoblasts as in 2.11) and MIC assay (using USA300-0114 as in 2.7) and no significant differences were observed comparing unlabeled and labeled LIN-LPNs (data not shown). We thus assumed that the labeling did not have an impact on the nanoparticles’ biological effects. Osteoblasts were seeded and grown on sterilized coverslips in a 35 mm poly-lysine coated cell culture dish. After osteoblasts reached confluence, 50 μl of 10 mg/ml of fluorescence labeled nanoparticles were introduced to each well. At the end of 6 h incubation at 37 °C, the osteoblast nuclei and cell membrane were stained with DAPI and wheat germ agglutinin (Alexa Fluor 633 Conjugate), respectively. The cells were then fixed with 4% formaldehyde for 10 min and mounted on slides with Fluoromount. Nanoparticle internalization was visualized with a Leica DM IRE2 confocal microscope with a TCS SL system.
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2

Confocal Imaging of sd-rxRNA Uptake

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Confocal images of sd-rxRNA uptake in HeLa cells were acquired with a Leica DM IRE2 confocal microscope using a 63× oil immersion objective. Images were processed in ImageJ (v1.50d). For sd-rxRNA uptake, total fluorescence intensity was measured. For measuring sd-rxRNA in the perinuclear region, a line was drawn through the longest part of the cell that intersects the nucleus. sd-rxRNA fluorescence intensity was measured on this line 10 pixels from the nucleus on both sides. Likewise, plot profiles were also acquired in ImageJ using the same lines.
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3

Drosophila Cell Culture and Transfection

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Culture of Drosophila cells in Schneider’s medium (Bio & Sell, Nürnberg, Germany) supplemented with 10% FBS and penicillin/streptomycin (Life Technologies) and transfection conditions were as previously described (Bottcher et al. 2014 (link); Shah and Forstemann 2008 (link)). Details on the transfection of PCR products are given in the detailed protocol provided in File S1 and File S2. GFP expression was quantified using a Becton-Dickinson FACScalibur flow cytometer; data analysis was performed with Flowing Software 2.0 (http://www.flowingsoftware.com) using a two-dimensional plot (SSC and GFP fluorescence) to separate nonfluorescent from GFP-positive cells. Fluorescence microscopy images were acquired on a Leica DM IRE2 confocal microscope. Induction of the mtnDE promoter was achieved by adding CuSO4 from a sterile 100 mM stock solution directly into the culture medium (final concentrations between 30 µM and 1 mM). The effective concentrations are likely somewhat lower since amino group-containing components from the medium form complexes with copper ions (visible as a change to a slight blue color with increasing concentrations). The conditions for induction should therefore be verified if serum-free culture medium is employed.
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4

Glucose Uptake in Organotypic Brain Slices

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GSC–organotypic brain slice co-cultures were incubated overnight to ensure GSC engraftment into the brain slices. The co-culture brain slices were then incubated with 50 μM TAT or TAT-CX43266–283 for 48 h. On the day of the assay, the brain slices were incubated for 30 min in glucose-free medium (RPMI; Sigma-Aldrich) and subsequently for 1 h in glucose-free medium supplemented with 146 μM 2-NBDG  (2-[N-(7-nitrobenz-2-oxa-1,3-diazol-4-ylamino]−2-deoxy-d-glucose). The brain slices were then washed with ice-cold phosphate-buffered saline (PBS) and mounted for confocal microscopy with SlowFade Gold Antifade reagent (Life Technologies). Images were taken on a Leica DM-IRE2 confocal microscope. For 2-NBDG uptake analysis, regions of interest (ROIs) were generated with the ‘Wand’ tool (ImageJ) in the GSC images and the mean grey values of the ROIs were measured in the corresponding 2-NBDG images.
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5

Visualizing Rf-LPN Distribution in Biofilms and Osteoblasts

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Distribution of Rf-LPN in biofilms was visualized by confocal laser-scanning microscopy (CLSM). The bacteria suspension was incubated in 96-well plate overnight. Rf-LPN labeled with fluorescent DPPE-lissamine rhodamine B were added to the wells. We limited the amount of fluorescent-phospholipid used to be 0.25 %w/w by total weight of the nanoparticles. At this quantity we observed no significant differences in particle size, drug loading and release behaviors, cytotoxicity and rifampicin uptake performance (data not shown). After 12 h, each well was washed with PBS three times and stained with 10 μg/ml wheat germ agglutinin-Alexa Fluor 633 for 15 min to indicate the biofilm structure. The samples were fixed with 4% formaldehyde before scanned with Operetta CLS High-Content Analysis System (PerkinElmer, Walham, MA).
To visualize distribution of Rf-LPN in osteoblasts, the cells grown on poly-lysine treated coverslips were treated with 50 μl of 10 mg/ml Rf-LPNs labeled with 0.25 %w/w DPPE-lissamine rhodamine B for 6 h at 37 °C. The osteoblast nuclei and cell membrane were stained with DAPI and wheat germ agglutinin Alexa Fluor 633 Conjugate, respectively. The cells were then washed with PBS, fixed with 4% formaldehyde for 10 min, mounted on slides with Fluoromount and visualized with a Leica DM IRE2 confocal microscope with a TCS SL system.
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6

Live and Dead Cell Visualization

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To visualize the distribution of live and dead cells in the scaffolds, the cells were stained with a 4µM Ethidium homodimer-1 and 2µM calcein AM solution. The cells were incubated for 30–45 minutes at room temperature and then imaged on an inverted Leica DMIRE2 confocal microscope.
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7

Immunocytochemistry of Alpha-Synuclein

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For ICC, cells were plated on 50 μg/mL PDL-coated 12-mm glass coverslips. Cells were washed with PBS and incubated in 4% paraformaldehyde for 30 min at RT. After fixing, the cells were washed with PBS and incubated in blocking agent (2% BSA, 0.05% Tween-20, and 0.5% Triton X-100 in PBS) for 45 min. Cells were then incubated with antibodies against human αSyn (Syn 211; Santa Cruz, 1:500) and GFP (Abcam 1:2000) overnight at 4°C or the cytoskeleton marker Phalloidin (Alexa Fluor 647 phalloidin, Invitrogen) for 30 min at RT. After primary incubation, the cells were washed and incubated in the dark for 90 min with Alexa-488 and -555 dye-conjugated secondary antibodies (Invitrogen, 1:1000). Hoechst 44432 was used as a nuclear stain and the coverslips were then mounted on glass slides and viewed with 63× and 43× oil objectives using a Leica DMIRE2 confocal microscope.
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8

GC Formation Analysis in Mice

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For GC formation analysis, the spleens from 1-year-old mice or SRBC-immunized mice were detached and frozen in OCT compound. Tissues were sectioned to 7 μm thickness, fixed in acetone at −20 °C, washed with PBS, and blocked with 0.1% BSA in PBS for 30 min at room temperature. Tissues were stained with anti-PNA-FITC (Sigma-Aldrich, St. Louis, MO, USA), IgD-PE, and CD4-APC (eBioscience) antibodies diluted in blocking solution overnight at 4 °C. The tissues were incubated with ProLong Gold anti-fade reagent (Life Technologies, Carlsbad, CA, USA) for 30 min at 4 °C, and images were obtained using a Leica DM IRE2 confocal microscope.
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9

Immunohistochemical Analysis of Glioblastoma

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Example 2

Immunohistochemistry

Tissue samples from hGBM, normal human and mouse brain were post-fixed in 4% paraformaldehyde (PFA) for 24 h and placed in a sucrose solution at decreasing concentrations beginning at 30%. Hematoxylin and Eosin (H&E) staining and immunohistochemistry were performed on OCT-embedded, 10 μm-thick cryostat sections (Galli et al., 2004; Vescovi et al., 1999). Tissue sections were stained overnight at 4° C. with the following primary antibodies diluted in 10% normal goat serum (NGS; Gibco, Rockville, Md., USA): mouse anti-EphA2 cloneD7 (1:200; Sigma; St. Louis, Mo., USA), mouse anti-SSEA1 and mouse anti-CD44 (1:100; BD Biosciences, Franklin Lakes, N.J., USA). Goat anti-mouse AlexaFluor488/546 (1:2000; Invitrogen Corp, Carlsbad, Calif., USA) was then employed. Cell nuclei were counterstained by TO-PRO-3 (Molecular Probes, Invitrogen). Negative controls were obtained by omitting primary antibody. Samples were photographed with Zeiss Axioplan2 Microscope and Leica DMIRE2 Confocal Microscope.

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10

IFITM Protein Localization in Endosomes

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The PK-15 cells were transfected with swine IFITM expression constructs in glass-bottomed coverslips (NEST Biotechnology, Wuxi, China) for 24 h. Then, the cells were fixed with 4% (vol/vol) paraformaldehyde at 4°C for 30 min. Following cell fixation, QuickBlock Blocking Buffer for Immunol Staining (Beyotime, Shanghai, China) was used. All the samples were stained with ANTI-FLAG monoclonal antibody (Sigma-Aldrich) to detect IFITM proteins and anti-LAMP1 monoclonal antibody (Abcam; ab25245) to detect endosomes, and they were then incubated with Alexa Fluor 488 conjugated goat anti-mouse polyclonal antibody (Abcam; ab150113) and Alexa Fluor 594 conjugated goat anti-rabbit polyclonal antibody (Abcam; ab150080). The nuclear DNA was labeled with 4′,6-diamidino-2-phenylindole solution (Beyotime, Shanghai, China). Finally, all the cells were visualized with a Leica DM-IRE2 confocal microscope using a 63× immersion oil objective. Images were captured with the Leica Application Suite advanced fluorescence software (LAS X) and the ImageJ package.
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