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4 protocols using bp1 pe

1

Western Blotting and Flow Cytometry Antibodies

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Western blotting antibodies were HMGN1 (Aviva Systems Biology, #ARP38532_P050), HMGN1 (Abcam, #ab5212), mouse HMGN1 (affinity purified rabbit polyclonal)34 (link),35 (link), H3K27me3 (Cell Signaling Technologies, #9733, rabbit polyclonal), total H3 (Cell Signaling Technologies, #9715, rabbit polyclonal), and α-tubulin (Sigma, #T9026, mouse monoclonal). Flow cytometry antibodies were B220-Pacific Blue (BD Pharmingen, #558108, clone RA3-6B2), CD43-APC (BD, #560663, clone S7) or CD43-FITC (BD, #561856, clone S7), CD24-PE-Cy7 (BD, #560536, clone M1/69), BP1-PE (eBiosciences, 12-5891, clone 6C3) or BP1-FITC (eBiosciences, 11-5891, clone 6C3), CD45.1-PE-Cy7 (eBiosciences, 25-0453, clone A20), and CD45.2-APC (eBiosciences, 17-0454, clone 104). ChIP-seq antibodies were H3K27me3 (Cell Signaling Technologies, #9733), H3K4me3 (Abcam, #ab8580), and H3K27ac (Abcam, #ab4729).
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2

Comprehensive Hematopoietic Profiling in Mice

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Peripheral blood from each mouse was subjected to complete blood count. Tibias, femurs, iliac crests, spines, ulnae, radii, and humeri were harvested for bone marrow cells. Spleen and thymus were collected for lymphocyte staining. Flow cytometry staining for all hematopoietic subpopulations including T cell developmental stages was performed as previously described (Yu et al., 2015a (link)). For B cell development, the following scheme was used: B220-Pacific Blue (BD Biosciences 558108), IgM-PE-Cy5 (eBiosciences 15-5790-82), CD43-fluorescein isothiocyanate (FITC) (eBiosciences 11-0431-82), CD24-APC (Biolegend 101814), and BP1-PE (eBiosciences 12-5891-83). Definitions of stages of B cell maturation were as follows: A′ pre-pro-B (IgMB220+CD43+BP1CD24), B′ pro-B (IgMB220+CD43+BP1CD24+), C′ pro-B (IgMB220+CD43+BP1+CD24lo), C″ pro-B (IgMB220+CD43+BP1+CD24hi), pro-B (IgMB220+CD43+), pre-B (IgMB220+CD43), B progenitors (IgMB220+), immature B (IgM+B220lo), and mature B (IgM+B220hi). For cell-cycle analysis, bromodeoxyuridine-FITC and 7AAD, or Ki67-FITC and DAPI staining were coupled with staining of specific populations to reveal their cell-cycle status.
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3

Western Blotting and Flow Cytometry Antibodies

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Western blotting antibodies were HMGN1 (Aviva Systems Biology, #ARP38532_P050), HMGN1 (Abcam, #ab5212), mouse HMGN1 (affinity purified rabbit polyclonal)34 (link),35 (link), H3K27me3 (Cell Signaling Technologies, #9733, rabbit polyclonal), total H3 (Cell Signaling Technologies, #9715, rabbit polyclonal), and α-tubulin (Sigma, #T9026, mouse monoclonal). Flow cytometry antibodies were B220-Pacific Blue (BD Pharmingen, #558108, clone RA3-6B2), CD43-APC (BD, #560663, clone S7) or CD43-FITC (BD, #561856, clone S7), CD24-PE-Cy7 (BD, #560536, clone M1/69), BP1-PE (eBiosciences, 12-5891, clone 6C3) or BP1-FITC (eBiosciences, 11-5891, clone 6C3), CD45.1-PE-Cy7 (eBiosciences, 25-0453, clone A20), and CD45.2-APC (eBiosciences, 17-0454, clone 104). ChIP-seq antibodies were H3K27me3 (Cell Signaling Technologies, #9733), H3K4me3 (Abcam, #ab8580), and H3K27ac (Abcam, #ab4729).
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4

Immunophenotyping of Differentiating Cells

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For differentiation of differentiating cells, cells were harvested, washed and stained with the following antibodies: CD44-APC (BD, IM7), CD25-FITC (eBioscience, PC61.5), CD93-APC (eBioscience, AA4.1), B220-FITC (BD, RA3–6B2), CD19-APC (eBioscience, 1D3), IgM-PE (eBioscience, eB121–15F9), B220-APC (eBioscience, RA3–6B2), Thy1.2-FITC (eBioscience, 30-H12), CD135-APC (BioLegend, A2F10), CD127-PE (eBioscience, A7R34), BP-1-PE (eBioscience, 6C3), CD24-APC-Cy7 (eBioscience, M1/69), CD43-APC (BioLegend, S11). For intracellular staining, cells were permeabilized using 0.05 % saponin and stained with antibodies against CD79a-APC (BioLegend, F11–172), CD79b-FITC (BioLegend, HM79–12), CD179a-BV421 (BioLegend, R3), CD179b-BB700 (BioLegend, LM34). For the Bcl-2-specific stain, the Foxp3 staining kit (ThermoFisher) was used. As antibody, Bcl-2-AF647 (BioLegend, 10C4) was used. Analysis was carried out using a FACS Canto II cytometer (Beckton Dickinson).
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