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9 protocols using anti ck18

1

Western Blotting for Protein Expression Analysis

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Cells were prepared and lysed in ice-cold RIPA buffer (cat. no. 89900; Thermo Fisher Scientific, Inc.) containing freshly added Halt Phosphatase Inhibitor Cocktail and Protease Inhibitor Cocktail, and protein concentrations were determined using the Bradford protein assay (Bio-Rad Laboratories, Inc.). Samples of 20 µg proteins were separated via SDS-PAGE on a 12% gel (Bio-Rad Laboratories, Inc.) and proteins were immunoblotted onto nitrocellulose membranes. The membranes were blocked in 5% non-fat milk for 1 h at room temperature and probed with primary antibodies [anti-β-actin (1:1,000; cat. no. 60008-1-Ig; ProteinTech Group, Inc.), anti-Vim (1:1,000; cat. no. ab92547; Abcam) or anti-CK18 (1:1,000; cat. no. ab133263; Abcam)] at 4˚C overnight, followed by HRP-conjugated secondary antibodies [HRP-conjugated Affinipure Goat Anti-Mouse IgG (H + L) (cat. no. SA00001-1; 1:2,500; ProteinTech Group, Inc.) and HRP-conjugated Affinipure Goat Anti-Rabbit IgG (H + L) (cat. no. SA00001-2; 1:2,500; ProteinTech Group, Inc.)] for 2 h at room temperature. The blots were visualized using Immobilon Western Chemiluminescent HRP Substrate (cat. no. WBKLS0500; MilliporeSigma), and images were captured using the ECL Tanon 5500 system (Tanon Science and Technology Co., Ltd.). Protein expression was normalized to the expression levels of β-actin.
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2

Immunofluorescence Staining of Liver Tissue

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Frozen sections (4-μm thick) of liver tissue were prepared for immunofluorescence staining. In brief, sections were stained by overnight incubation with primary antibodies, such as anti-KIAA1199 (Proteintech, 1:200), anti-CK18 (Abcam, 1:200), and anti-phalloidin (Abcam, 1:200). Alexa 488-conjugated goat anti-rabbit (A11008, Thermo Fisher; 1:1000) or Alexa 568-conjugated goat anti-mouse (A-21043, Invitrogen; 1:1000) secondary antibodies were used. After three washes with PBST, the slides were incubated with DAPI (Beyotime, 1:2000) for 5 min. In addition, LC3 lentivirus was transfected into CCA cells according to the manufacturer’s recommendations. Images were acquired with a fluorescence microscope (LSM 780, Carl Zeiss).
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3

Western Blot Analysis of Kidney Cell Markers

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HK-2 cells or renal tissue samples were rinsed with ice-cold PBS and lysed using RIPA lysis buffer (Beyotime, Shanghai, China). The lysates were centrifuged at 12,000×g at 4°C for 10 min, and the supernatants were collected to measure protein concentration by BCA Protein Assay Kit (Beyotime, Shanghai, China). Equal amounts of proteins (30 μg) were separated by 12% SDS-PAGE and then electrophoretically transferred to a PVDF membrane (Beyotime, Shanghai, China). The membranes were blocked with 5% skim milk in TBST and then incubated with primary antibodies (anti-CK-18: Abcam, 1:1000; anti-α-SMA: Abcam, 1:1000; anti-MMP9: Abcam, 1:1000; anti-p-Smad2: Abcam, 1:1000; anti-p-Smad3: Abcam, 1:1000; anti-Collagen III: Abcam, 1:1000; anti-Fibronectin: Abcam, 1:1000; anti-β-actin: Abcam, 1:1000; Cambridge, MA, USA) at 4°C overnight. Then, membranes were incubated with secondary antibodies (Goat Anti-Rabbit IgG: Abcam, 1:5000, Cambridge, MA, USA) at room temperature for 1 h. The bands of proteins were visualized using a chemiluminescent detection system (BeyoECL Plus, Beyotime, Shanghai, China). Finally, band densities were examined using IPP Image-Pro Plus software. β-actin was used as the internal control.
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4

Western Blot Analysis of Cell Signaling Proteins

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Western blot analyses were carried out with 100 µg of whole-cell extract derived as previously reported(Gonzalez et al., 2011 (link)). Membranes were blocked and incubated with primary antibodies in 4% milk (Sigma-Aldrich, #A3059) in TBS-T (Bio-Rad, #161–0372, with 0.05% Tween20) at 4°C overnight.). Abcam antibodies: anti-CK18 (#ab32118) and anti-WNT5A (#ab72583). Cell Signaling antibodies: anti-ZEB1 (#3396), anti-SOX2 (#3579). Thermo-Fisher antibodies: anti-ELMO1 (#PA5–28406), anti-CD204 (# PA5–22956), anti-IL1RL2 (#PA5–38013), anti-SIRPB1 (#PA5–35262). Mouse monoclonal β-Actin-HRP (Santa Cruz, #47778) was used as loading control.
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5

Biomarker Expression Analysis in Samples

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The ALOX15, USP7 and hnRNPA1 expression were assessed by western blotting analysis and samples were normalized to GAPDH. Protein extraction was blocked with PBS-5% fat-free dried milk at room temperature for 1 h and incubated at 4 °C overnight with anti-ALOX15 (1:1000, Santa cruz), anti-hnRNPA1 (1:1000, Santa cruz), anti-CD63 (1:2000, Abcam), anti-TSG101 (1:1000, Santa Cruz), anti-Alix (1: 1000, Santa Cruz), anti-ubiquitin (1:1000, Santa Cruz), anti-α-SMA (1: 1000, Abcam), anti-FAP (1: 1000, Abcam), andti-FSP1 (1: 1000, Abcam), anti-CEA (1:1000, Abcam), anti-CK-18 (1:1000, Abcam) and anti-GAPDH (1:3000, Santa Cruz) antibodies respectively.
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6

Antibody Panel for Cell Characterization

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Primary antibodies used include: NOTCH4 receptor (1:200 dilution, Millipore), anti-CK18 (1:200 dilution, Abcam), anti-K-5 and anti-K14 (1:200 dilution, Covance), anti-CDH1 and anti-VIM (1:50, Santa Cruz Biotechnology).
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7

Immunocytochemistry Analysis of Neural Markers

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Nasal swabs were also processed for immunocytochemistry. Slides were incubated overnight at 4°C with primary antibodies: anti‐β3 tubulin (1:400; catalog number [cn] T2200; Sigma), anti‐β3 tubulin (1:400; cn 322600; Invitrogen), anti‐β4 tubulin (1:500; cn T7941; Sigma), anti‐CK18 (1:300; cn ab32118; Abcam), anti‐p62 (1:150; cn 610833; BD), anti‐PGP9.5 (1:600; cn GTX634797; Genetex), anti‐TARDBP (1:200; cn sc‐376311; Santa Cruz), anti‐TDP‐43 C‐term (1:200; cn T1580; Merck), anti‐TDP‐43 pS409/410 (1:800; cn TIP‐PTD‐P01; Cosmobio)
22 (link) antibodies. The next day, slides were washed and incubated for 1 hour at room temperature with Alexa Fluor‐conjugated secondary antibodies (1:1000, Life Technologies). After washing, slides were incubated with DAPI (1:2000) for 5 minutes and mounted with DABCO (Sigma‐Aldrich). Images were acquired using an Axiolab fluorescence microscope (Zeiss).
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8

Western Blot Analysis of Breast Cancer Markers

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The cells were treated with radioimmunoprecipitation assay (RIPA) lysis buffer, and 25–50 μg of the extracted protein was used for western blotting. The proteins of interest were detected by using the enhanced chemiluminescence system (ECL) (Millipore) as the manufacturer’s instructions. Expression of beta-actin was used as an internal control in this experiment. Antibodies used in this experiment included anti-ER (Abcam, EPR4097), anti-PR (LSBIO, 4E9), anti-EGFR (Cell Signaling), anti-E-cadherin (Millipore), anti-HER2 (Abcam, EP1045Y), anti-CK18 (Abcam), anti-CK19 (Abcam, EP1580Y), anti-CK6 (Abcam, EPR1602Y), anti-CK5 (Abcam), and anti-beta-actin (Sigma-Aldrich).
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9

Liver Protein Expression Analysis

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Liver tissues were homogenized using an extraction buffer containing proteinase inhibitors (Jianglai Biotech, Shanghai, China). The lysates were then centrifuged at 12,000 rpm for 10 min at 4°C, and the protein concentrations were determined using a protein assay kit (Bio-Rad Laboratories Inc., Hercules, CA). Twenty microgram of proteins was electrophoresed on a 5% sodium dodecyl sulfate-polyacrylamide gel and then transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA). The membranes were blocked with 5% skin milk in Tris-buffered saline containing 0.1% Tween-20 for 1 hr at room temperature. Then the membranes were incubated with primary antibodies to anti-ALB (Santa Cruz; 1:200), anti-CK18 (Abcam; 1:200), or anti-HNF4α (Abcam; 1:200) at 4°C overnight, and incubated with the horseradish peroxidaseconjugated secondary antibodies for 1 hr at room temperature. Specific protein bands were developed using an enhanced chemiluminescence detection kit (Amersham, Piscataway, NJ). The membranes were also probed with β-actin antibody as loading control.
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