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12 protocols using accumax cell dissociation solution

1

Cell Line Culturing and Characterization

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A375, A2058, Malme3M, 501mel, SK2 and SK30 cells were obtained from Dr. Philip Hinds, Tufts University Medical School (Boston, MA) and Dr. Hans R. Widlund, Brigham and Women’s Hospital (Boston, MA). A2780, H69AR, and 4T1 cells were acquired from the ATCC (Manassas, VA). NCI/ADR-RES cells were obtained from the National Cancer Institute, Frederick, MD. A2780ADR cells were purchased from Sigma Aldrich (St. Louis, MO). A375, A2058, Malme3M, 501mel, SK2, SK30, 4T1 and NCI/ADR-RES were cultured in DMEM medium (CellGro, Kansas City, MO). A2780, A2780ADR, H69AR were grown in RPMI medium (CellGro, Kansas City, MO). The media were supplemented with 10% Fetal Bovine Serum (FBS) and a 1% antibiotic solution (10,000 IU/ml penicillin, 10,000 µg/ml streptomycin, and 25ug/ml amphotericin B) to obtain serum-containing complete media. H69AR cells required RPMI medium supplemented with 20% FBS. The CellTiter-Glo® Luminescence assay was purchased from Promega, Madison, WI, and the Accumax® Cell Dissociation solution was from Innovative Cell Technologies, San Diego, CA. Hoechst 33342 dye was obtained from Molecular Probes, Inc., Eugene, OR.
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2

Single-cell analysis of kidney organoids

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Two dd16 and two dd28 kidney organoids of the same differentiation batch were dissociated by incubating with the Accumax™ Cell Dissociation Solution (Innovative Cell Technologies, Inc.) for 20min with gentle pipetting using P1000 tips. The dissociation enzyme was neutralized by autoMACS™ Running Buffer (Milteny Biotec), and the cells were centrifuged at 300 g for 5min. The pellet was resuspended in autoMACS™ Running Buffer (Milteny Biotec). The cell solution was run through a 40-μm cell strainer (Falcon) before live single cells (DAPI− DRAQ5+) were selected using FACS. The single cells were captured and subjected to single-cell sequencing using the Chromium 10x genomics platform (Lindström et al., 2018c). The two dd16 datasets and two dd28 datasets were merged with the Seurat package using MergeSeurat function. Quality control and cluster finding were performed as described above for the human kidney datasets.
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3

Flow Cytometry Cell Surface Staining

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To detect surface expression of FcγRIa V450 Mouse anti-Human CD64 (BD 561202) and V450 Mouse IgG1, κ Isotype control (BD 560373) antibodies were used according to the manufacturer’s protocol. Briefly, adherent cell (4x105 cells per well) were washed once with PBS, detached from the surface by incubating in 150μl of Accumax Cell Dissociation Solution (Innovative Cell Technologies, Inc.) for 5 min at 37°C, transferred to V-bottom 96-well plates, pelleted by centrifugation at 300 x g for 5 min, washed once PBS and staining buffer (2% FBS in 1×PBS). Cells were then resuspended in 50μl of staining buffer and 2.5μl of fluorescently tagged antibody was added. Cells were incubated for 30 min at room temperature, in the dark. After incubation, cells were washed twice in staining buffer, resuspended in 150μl of staining buffer and analyzed immediately by flow cytometry.
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4

Flow Cytometry Analysis of Cells

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For flow cytometry analysis, cells were detached from the tissue culture plate by incubating in 150μl of Accumax Cell Dissociation Solution (Innovative Cell Technologies, Inc.) for 5 min at 37°C, transferred to V-bottom 96-well plates, pelleted by centrifugation at 800 x g for 5 min, resuspended in 1% paraformaldehyde (PFA) and incubated at 4°C for at least 30 min. Fixed cells were then pelleted at 800 x g for 5 min and resuspended in 150μl of 1×PBS containing 3% FBS. Plates were stored at 4°C if flow cytometry was not carried out immediately. Samples were analyzed using a Stratedigm S1000 flow cytometer equipped with 405nm, 488nm and 561nm lasers. Data was analyzed using FlowJo Software (Treestar).
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5

Cell Culture and Characterization Protocol

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NCI/ADR-RES (National Cancer Institute, Frederick, MD) cells were cultured in Dulbecco’s modification of Eagles Medium (DMEM; CellGro, Kansas City, MO). The media was supplemented with 10% Fetal Bovine Serum (FBS) and a 1% antibiotic solution (10,000 IU/ml penicillin, 10,000 μg/ml streptomycin, and 25ug/ml amphotericin B) to obtain serum-containing complete media. Tissue-Tek® O.C.T. compound (Sakura Finetek USA, Inc., CA, USA), Protocol® Harris’ hematoxylin (Fisher Scientific, USA) and Eosin Y (Sigma Aldrich, St. Louis, MO) were purchased for H&E staining. The CellTiter-Glo® Luminescence assay was purchased from Promega, Madison, WI, and the Accumax® Cell Dissociation solution was from Innovative Cell Technologies, San Diego, CA. Hoechst 33342 was obtained from Molecular Probes, Inc., Eugene, OR.
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6

Xenotransplantation of GBM Tumor Cells

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Mice: All animal studies were conducted with institutional oversight under an IACUC-approved animal care and use protocol (ACUP) at Certis Oncology Solutions using adult female NOG mice (Taconic, Germantown, NY, USA).
Preparation of Cells for Xenotransplantation:
Cells were grown and subcultured in GBM media as described previously [28 (link)]. On the day of implantation, tumor spheres were dissociated into a single cell suspension using Accumax Cell Dissociation Solution (Innovative Cell Technologies, Novi, MI, USA. #AM105) according to standard manufacturer recommendations. Cell numbers and viability were quantified using the Countess II Automated Cell Counter (Invitrogen, Waltham, MA, USA). Cells were resuspended in either GBM media (intracranial implants) or PBS:Matrigel (50:50) (subcutaneous implants) (Corning, Tewksbury, MA, USA. #356237) at the appropriate density for in vivo implantation. Cell suspensions were kept on ice until injection.
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7

Isolation of B cells from Murine Tissues

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B cells were isolated from bone marrow (BM), subchondral BM (SBM) and synovium of mice. BM cells were flushed out from the femora and tibiae. To harvest SBM cells, all the joints including knees, fore and hind paws were separated, and muscles were removed. Subchondral (between the articular cartilage and growth plate) and synovial tissues were cut into small pieces and digested using Accumax Cell Dissociation Solution (Innovative Cell Technologies) at room temperature for one hour to yield SBM cells. Both SBM and synovial B cells were isolated together given their anatomic proximity and are referred to throughout the manuscript as SBM (SBM plus synovial B cells). RBCs from BM and SBM cells were eliminated using RBC lysis buffer. B cells were then purified, based on CD19 expression using microbeads conjugated with anti-CD19 antibody (Ab) and magnetic isolation (Miltenyi Biotec, Auburn, CA)50 (link). Human peripheral blood mononuclear cells (PBMCs) were purified from heparinized PB by Ficoll-Hypaque density gradient centrifugation (Pharmacia Biotech), and B cells were isolated based on CD19 expression using CD19 microbeads and magnetic isolation (Miltenyi Biotec, Auburn, CA)4 (link).
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8

Intracellular Hydrogen Sulfide Detection by Flow Cytometry

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Cells were grown in a 24-well plate (Corning). DMSO stock solution of P3 (Calbiochem, 10 μM as a final concentration), SF7-AM (Tocris, 0.25 μM as a final concentration) or HSip-1 DA (Dojindo, 0.25 μM as a final concentration) was added to the cell culture media followed by a 30 min incubation in the same CO2 incubator for cell growth at 37°C. Cells were washed with PBS. For adherent cells, cells were incubated with Accumax Cell Dissociation Solution (Innovative Cell Technologies) at room temperature for 10 min to disassociate cells from plate, and harvested in DMEM medium supplemented with 1% dialyzed FBS for the analysis on a Fortessa flow cytometer (BD Biosciences, Ex/Em=378/524 nm for P3, Ex/Em=480/520 nm for SF-7AM and HSip-1 DA). FlowJo software was used to analyze mean values of the population. Most intracellular H2S measurements were performed by flow cytometry using SF7-AM unless otherwise specified.
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9

Propidium Iodide Cell Cycle Analysis

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Cell cycle effects were analyzed after 24 h (data not shown) and 48 h treatment using propidium iodide staining to label DNA content. Briefly, cells were detached with Accumax cell dissociation solution (Innovative Cell Technologies, San Diego, CA USA), collected in tubes with 1% fetal bovine serum (FBS) in Phosphate Buffered Saline (PBS) and centrifuged for 5 m at 300 rcf at 4 °C. The cell pellet was washed twice with 1% FBS in PBS, filtered, and resuspended in 70% cold ethanol for overnight fixation. The following day, samples were centrifuged for 10 m at 500 rcf at 4 °C, resuspended in cold PBS. Samples were centrifuged again for 5 m at 300 rcf at 4 °C and resuspended in DNA staining solution [2% propidium iodide (Sigma Aldrich), 0.1% Triton X-100 (Sigma Aldrich), in PBS]. Samples were then incubated for 30 m at room temperature and analyzed with an excitation of wavelength of 488 nm and emission of 617 nm. Only C2 and D17 cell lines were analyzed due to the presence of frequent doublets with CMT-12 cells resulting in an artificial accumulation in the G2/M phase.
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10

Equine Mesenchymal Stem Cell Therapy

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Passage 2 MSCs isolated previously from horses of ELA haplotype ELA-A2 and identified as either MHC class II-negative or class II-positive were thawed from liquid nitrogen storage and expanded by in vitro culture as described previously until 30 × 106 to 50 × 106 cells were attained (Table 1) [24 (link)]. This number of cells was chosen based on a clinically relevant range as well as previous studies in the literature from other species in which the stem cell dose was calculated according to body weight [25 (link)-27 (link)]. MSCs were lifted from tissue culture plates using Accumax cell dissociation solution (Innovative Cell Technologies Inc., San Diego, CA, USA), washed three times with phosphate-buffered saline to remove residual fetal bovine serum (FBS), counted, and resuspended in 1 ml phosphate-buffered saline for injection. MSCs were maintained at room/ambient temperature during transport from the laboratory to the recipient horse [35 (link)]. Immediately prior to MSC injection, an approximately 10 cm × 10 cm area on the left side of the recipient’s neck was clipped and prepared in a sterile manner. The MSC suspension was then injected intradermally using a 20 G needle. Recipient horses were monitored for increased respiratory rate, heart rate, and body temperature as well as swelling, heat, and pain at the site of injection for the duration of the study.
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