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11 protocols using alkaline phosphatase

1

Biomarkers in Rabbit Retina

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The activities of plasma enzymes alanine aminotransferase (ALT) (Abcam, Cambridge, MA, USA), aspartate aminotransferase (GOT) (Abcam, Cambridge, MA, USA), alkaline phosphatase (Abcam, Cambridge, MA, USA), in addition to the plasma levels of total bilirubin (Abcam, Cambridge, MA, USA), albumin (Abcam, Cambridge, MA, USA), chloride (Abcam, Cambridge, MA, USA), blood urea nitrogen (BUN) (Fisher Scientific, Madrid, Spain), creatinine (Abcam, Cambridge, MA, USA), calcium (Abcam, Cambridge, MA, USA), phosphate (Abcam, Cambridge, MA, USA), sodium (Abcam, Cambridge, MA, USA), potassium (Abcam, Cambridge, MA, USA), urea and uric acid (Abcam, Cambridge, MA, USA), were determined by commercial assay kits.
The determinations of CAT, SOD and GPx in the rabbit retinas were made using the Catalase Assay Kit, the Superoxide Dismutase Assay Kit and the Glutathione Peroxidase Assay Kit (Cayman Chemical, Ann Arbor, MI, USA) by spectrophotometry following the manufacturer protocols.
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2

Protein Separation and Detection by SDS-PAGE and Western Blot

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Protein samples were subjected to 12% SDS-PAGE gels. After electrophoresis, gels were either stained with Coomassie brilliant blue or silver. For Western blot analysis, the proteins were transferred to a 0.45 μm nitrocellulose membrane (Sigma-Aldrich) using semi-dry electrophoresis transfer (Bio-Rad Trans-Blot SD system). The blot was developed with rabbit anti-GFP antiserum (Abcam) diluted 1:5000, followed by secondary goat anti-rabbit antibody conjugated with alkaline phosphatase (Abcam). Specific immunoreactive proteins were detected using a Western Blot ECL Plus kit (GE Healthcare).
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3

ZIKV Antibody Binding Assay

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BOB was performed as described previously (11 (link)). Briefly, a 96-well plate was coated with 4G2 at 100 ng/well, and the plate was blocked with 3% nonfat milk diluted in 1× TBS plus 0.05% Tween. ZIKV was diluted 1:1 in blocking buffer and was added to the plate. Monoclonal antibodies were serially diluted 1:4 in blocking buffer and were added to the plate starting at 100 ng/well. B11F was conjugated with alkaline phosphatase (Abcam) and was added to the plate at 100 ng/well. The PNPP substrate (Sigma) was added, and the absorbance at 405 nm was measured (BioTek).
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4

Assessing Therapeutic Potential of Sarpogrelate

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Sarpogrelate was obtained from Shanghai Linebon Ltd., Shanghai, China. Bromocriptine was sourced from Novartis, Italy. Cabergoline was purchased from Pfizer, Italy. Domperidone was purchased from Jamjoom Pharmaceuticals Co., KSA. Alloxan was obtained from Sigma-Aldrich (St Louis, MO, USA). Urea, creatinine, alkaline phosphatase, aspartate aminotransferase activity, LDH-1 assay kits, and the TNF alpha ELISA kit were obtained from Abcam, USA. The troponin I test kit was obtained from Encode Medical Engineering Company, Jeddah, KSA. 2,3,5-Triphenyltetrazolium chloride was obtained from Gold Biotechnology, USA.
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5

Comprehensive Blood Profile Analysis

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Peripheral blood samples are collected and dispatched to the clinical analysis laboratory for a comprehensive panel of tests. These tests include a complete blood count (flow cytometry and impedance – DXH 800), urea (urease with GLDH), creatinine (kinetic – IFCC), sodium, calcium, phosphate, and potassium (Selective Electrode), venous blood gases (Sensor-OMNI), aspartate aminotransferase (AST) and alanine aminotransferase (ALT) (kinetic – IFCC), and alkaline phosphatase (Abcam, Cambridge, UK).
To facilitate enzyme immunoassays, blood samples are collected and centrifuged at 3,500 rpm for 10 minutes. Plasma aliquots are cryopreserved in liquid nitrogen for subsequent measurements of N-terminal pro-B natriuretic peptide (NT-proBNP, Human pro-BNP Georgia, USA), fibroblast growth factor-23 (FGF-23; Abcam, Cambridge, UK), and parathyroid hormone (Sigma-Aldrich, San Luis, Missouri, EUA), α-Klotho (Quidel, San Diego, USA), and MILLIPLEX MAP Human Bone Magnetic Bead Panel - Bone Metabolism Multiplex Assay (Merck, Darmstadt, Germany). These quantitative measurements are performed in accordance with the manufacturer’s recommendations, and the absorbance is determined using a microplate reader (Biotek EPOCH 2).
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6

Hepatoprotective Effects of TAA and Silymarin

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TAA and silymarin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Assay kits used to measure aspartate aminotransferase (AST), alanine aminotransferase (ALT), alkaline phosphatase (ALP), and r-glutamyl transferase (GPT) were purchased from Abcam (Cambridge, UK). Malondialdehyde (MDA) assay kit was purchased from the R&D Systems (Minneapolis, MN, USA) and total glutathione (GSH) assay kit was purchased from Enzo Life Sciences (NY, USA). All other chemicals used in this study were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Quantifying Autophagy in Muscle Tissue

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LC3b was taken as a marker for autophagy. Resected thigh muscles were coated with paraffin and 4–6 μm sections were diced. Later samples were deparaffinised and rehydrated for coating with selected antibodies. BSA was used as a blocking agent and LC3 (Abcam) antibody was poured as primary antibody and incubated. After incubation with alkaline phosphatase (Abcam), the secondary antibody, substrate was provided and then counter staining with Mayer’s hematoxylin (Merck) was done and slides were observed under optical microscope at magnification of ×40.
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8

Immunohistochemical Analysis of Bone and Angiogenic Markers

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The sections were deparaffinized and treated with Antigen Unmasking Solution (Vector, Burlingame, CA, USA) for 30 min at 100 °C. Subsequently, these sections were washed with phosphate buffered saline (PBS), and endogenous peroxidase activity was blocked by incubation in methanol containing 0.3% H2O2 for 30 min. After blocking with 2% horse serum (Vector) for half an hour, the sections were incubated overnight with primary antibodies against osteoprotegerin (Abcam, Cambridge, UK), alkaline phosphatase (GeneTex), angiogenin (Abcam), and osteopontin (Abcam). The sections were then incubated with biotinylated anti-rabbit IgG antibody (Vector) for 60 min. The ABC complex system (Vector) was used to subsequently develop peroxidase via incubation in a VIP solution (Vector) to visualize the peroxidase label. Images were obtained with a microscope equipped with a Charge-coupled Device (CCD) camera (AxioCam HRC, Zeiss, Jena, Germany) to detect the signal.
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9

Quantifying Epitope-Tagged Protein Degradation

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Protein extracts for Western blot studies were prepared using a NaOH lysis procedure exactly as described (Stieg et al., 2018 (link); Willis et al., 2018 (link)). To detect epitope tagged proteins 1:5000 dilutions of all primary antibodies were used (anti-myc [UpState New York], anti-HA and anti-GFP [Abcam]) except that 1:2500 dilutions of anti-Pgk1 (Invitrogen) antibodies were used. Western blot signals were detected using 1:5000 dilutions of either goat anti-mouse or goat anti-rabbit secondary antibodies conjugated to alkaline phosphatase (Abcam) and the CDP-Star chemiluminescence kit (Thermo). Signals were quantified (relative to Pgk1 controls) by CCD camera imaging (Kodak). All degradation assays were performed more than once on biological replicates (see figure legends for the exact number). The SD was calculated from the mean (error bars) using GraphPad Prism 7. The half-life of cyclin C degradation was calculated from these graphs.
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10

Quantifying Osteogenic Protein Expression

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The committed MSCs were cultured with different concentrations of PBCA-Sr NPs for 7 days. The cells were lysed using M-PER Mammalian Protein Extraction Reagent (Thermo Fisher Scientific, Waltham, MA, USA) and centrifuged at 12,000 rpm at 4 °C for 15 min. Protein concentration was measured by Bio-Rad protein assay reagent. Protein separation was performed by using SDS polycarylamide gel electrophoresis (SDS-PAGE) and transferred onto PVDF membrane. Blocking of non-specific binding was achieved by placing the PVDF membrane in a 1% BSA blocking solution and stained with antibodies specific for osteocalcin (OCN, 1:1000, Santa Cruz Biotechnology), alkaline phosphatase (1:1000, Abcam, Cambridge, UK) or β-actin (1:10000, Santa Cruz), gently shaken in room temperature for 1 h, then washed 3 times for 15 min with washing buffer (10 mM Tris-base, pH 7.5, 100 mM NaCl 0.1% Tween 20). Secondary antibody diluted in peroxidase-containing blocking buffer is added, incubated for 1 h, then, washed 3 times for 15 min with washing buffer. The PVDF membrane was analyzed by chemiluminescent-base detection system for detection of protein expression.
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