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4 protocols using mouse anti gfp clones 7 1 and 13

1

Immunoblotting Antibody Preparation

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The following antibodies were purchased: rabbit anti-human α1-antitrypsin (Sigma Aldrich #A0409), used at 1:1000 for immunoblots; Mouse anti-GFP (clones 7.1 and 13.1) (Roche #11814460001), used at 1:1000 for immunoblots; Mouse anti-β-tubulin (AA2) (Millipore #05-661), used at 1:5000 for immunoblots; Sheep anti-Rabbit Ig-HRP conjugated (pre-adsorbed) (Rockland Immunochemicals, Pottstown, PA, USA) used at 1:5000 for immunoblots; Goat anti-Mouse Ig-HRP conjugated (pre-adsorbed) (Rockland Immunochemicals) used at 1:5000 for immunoblots. The rabbit anti-zebrafish IgM antibody (used at 1:2000 for immunoblots) was obtained from Dr J. Coll.
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2

Characterization of Intracellular Trafficking Proteins

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Primary monoclonal antibodies used and their sources (indicated in parentheses) were: mouse anti-TYRP1 (TA99/Mel-5; American Type Culture Collection); mouse anti-γ-Tubulin (GTU-88; Sigma-Aldrich); mouse anti-γ-adaptin (610385; BD); mouse anti-GFP (clones 7.1 and 13.1; Roche); rabbit anti-AP3M1 (ab201227; Abcam); rat anti–mouse LAMP2 (GL2A7; Abcam); rat anti-mouse TfR (CD71; BD 553264); and rat anti-HA (3F10; Roche 11867423001). Primary polyclonal antibodies used and their sources were: rabbit anti-STX13 (a kind gift of Rytis Prekeris, University of Colorado, Denver, CO; Prekeris et al., 1998 (link)); rabbit anti-pallidin (a kind gift of Juan Bonifacino, National Institute of Child Health and Human Development, Bethesda, MD; Moriyama and Bonifacino, 2002 (link)); rabbit anti-PI4KIIIβ (13247-1-AP; Proteintech); rabbit anti-PI4KIIα and anti-PI4KIIβ (kind gifts of Pietro De Camilli, Yale University, New Haven, CT; Guo et al., 2003 (link)); and rabbit anti-GFP (PABG1; Chromotek); Species- and/or mouse isotype–specific secondary antibodies from donkey or goat conjugated to Alexa Fluor 488, Alexa Fluor 594, or Alexa Fluor 640 used for IFM or to Alexa Fluor 680 or Alexa Fluor 790 for immunoblots were obtained from Jackson ImmunoResearch Laboratories.
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3

Antibody Panel for Cellular Protein Localization

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Primary monoclonal antibodies used and their sources (indicated in parentheses) were: mouse anti-TYRP1 (TA99/Mel-5, American Type Culture Collection; Rockville, MD); mouse anti-γ-Tubulin (GTU-88, Sigma); mouse anti-γ-adaptin (BD 610385); mouse anti-GFP (clones 7.1 and 13.1, Roche); rabbit anti-AP3M1 (ab201227; Abcam); rat anti-mouse LAMP2 (GL2A7, Abcam); rat anti-mouse TfR (CD71, BD 553264); and rat anti-HA (3F10, Roche 11867423001). Primary polyclonal antibodies used and their sources were: rabbit anti-STX13 (a kind gift of Rytis Prekeris, Univ. of Colorado, Denver, CO, USA) (Prekeris et al., 1998) ; rabbit anti-pallidin (a kind gift of Juan Bonifacino, National Institute of Child Health and Human Development, Bethesda, MD, USA) (Moriyama and Bonifacino, 2002) ; rabbit anti-PI4KIIIβ (13247-1-AP, Proteintech); rabbit anti-PI4KIIα and anti-PI4KIIβ (kind gifts of Pietro De Camilli, Yale Univ., New Haven, CT, USA) (Guo et al., 2003) ; and rabbit anti-GFP (PABG1, Chromotek); Species-and/or mouse isotype-specific secondary antibodies from donkey or goat conjugated to Alexa Fluor 488, Alexa Fluor 594, or Alexa Fluor 640 used for IFM or to Alexa Fluor 680 or Alexa Fluor 790 for immunoblots were obtained from Jackson ImmunoResearch Laboratories.
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4

Ciona robusta Embryo Visualization

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Adult Ciona robusta (intestinalis Type A) were collected by M-REP (San Diego, USA). Gametes were isolated for in vitro fertilization and dechorionation and subsequent electroporation following standard protocols 53, 54 . All plasmid sequences and mixes are described in Supplemental File 5. Embryos were raised at 20°C and fixed at the desired stage as calculated by hours post-fertilization. To obtain juveniles, larvae were allowed to metamorphose on (but not attach to) agarose-coated petri dishes in filtered/buffered artificial sea water supplemented with 1X penicillin-streptomycin (Omega Scientific, catalog number PS-20), followed by daily changes of penicillin-streptomycin sea water. For direct visualization of fluorescent proteins, in MEM-FA (3.7% formaldehyde, 0.1M MOPS pH7.4, 0.5M NaCl, 1 mM EGTA, 2 mM MgSO4, 0.05% Triton-X100) for 15 minutes, rinsed in 1X PBS/0.4% Triton-X100/50mM NH4Cl and 1X PBS/0.05% Triton-X100. For immunostaining of CD4::GFP, embryos were fixed and rinsed as above and incubated in mouse anti-GFP (clones 7.1 and 13.1, Roche) at 1:500 dilution for 1 hour, and AlexaFluor 488 goat anti-mouse IgG secondary (ThermoFisher, catalog number A11001) at 1:500 dilution for 1 hour. Both incubations were done in 1X PBS/0.05% Triton-X100/2% Normalized Goat Serum and rinsed in 1X PBS/0.05% Triton-X100. All samples were mounted in 1X PBS/50% Glycerol/2% DABCO.
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