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6 protocols using p10144

1

Immunofluorescence Staining of Cell Markers

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Cells were fixed for 10 min in 3.7% paraformaldehyde at RT, permeabilized with 0.1% Triton X-100 for 15 minutes at RT and blocked in PBS with 5% BSA for 1 hour at RT. Cells were incubated with primary antibodies (anti-GATA6 (AF1700, R&D systems, 8 μl/ml) or anti-SOX1 (AF3369, R&D systems, 8 μl/ml)) in blocking solution overnight at 4°C, rinsed and incubated with secondary antibodies (Fig. 2g: donkey anti-goat IgG Alexa Fluor Plus 488 (A32814, Invitrogen, 1 μl/ml); Extended Data Fig. 5c: donkey anti-goat IgG Alexa Fluor Plus 594 (A32758, Invitrogen, 1 μl/ml)) in blocking solution for 30 minutes at RT. Nuclei were stained with DAPI (Sigma, 28718-90-3) and mounting with anti-fading mounting medium (Life Technologies, P10144).
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2

Immunofluorescence Staining of Cell Markers

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Cells were fixed for 10 min in 3.7% paraformaldehyde at RT, permeabilized with 0.1% Triton X-100 for 15 minutes at RT and blocked in PBS with 5% BSA for 1 hour at RT. Cells were incubated with primary antibodies (anti-GATA6 (AF1700, R&D systems, 8 μl/ml) or anti-SOX1 (AF3369, R&D systems, 8 μl/ml)) in blocking solution overnight at 4°C, rinsed and incubated with secondary antibodies (Fig. 2g: donkey anti-goat IgG Alexa Fluor Plus 488 (A32814, Invitrogen, 1 μl/ml); Extended Data Fig. 5c: donkey anti-goat IgG Alexa Fluor Plus 594 (A32758, Invitrogen, 1 μl/ml)) in blocking solution for 30 minutes at RT. Nuclei were stained with DAPI (Sigma, 28718-90-3) and mounting with anti-fading mounting medium (Life Technologies, P10144).
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3

Immunofluorescence Staining of AHCY in FFPE Tissue

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IF was performed on 4-µm FFPE sections that had previously been kept at 60 °C for 2 h. FFPE sections for AHCY (10757-2-AP, Proteintech) IF staining were loaded onto a Leica Bond Rx autostainer. FFPE sections underwent on-board dewaxing (AR9222, Leica) and antigen retrieval using ER1 solution (AR9661, Leica) for 40 min at 95 °C. Sections were rinsed with Leica wash buffer (AR9590, Leica) before a 10% normal goat serum (X090710, Agilent) solution was applied for 30 min. Sections were rinsed with wash buffer before AHCY antibody was applied at a 1:500 dilution. Sections were rinsed with wash buffer and anti-rabbit IgG 647 diluted at a 1:250 ratio applied for 30 min before rinsing with wash buffer. DAPI was applied to the sections before rinsing with wash buffer and then the sections were coverslipped using pro-long gold (P10144, Thermo Fisher). Images were captured using the Keyence BZ-X810 microscope.
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4

Confocal Microscopy for Cellular Cholesterol Quantification

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We performed confocal laser scanning microscopy (Olympus, FV1000) to image and examine the cellular cholesterol levels using filipin III (catalog no. SC-205323A; Santa Cruz Biotechnology, USA). J774A.1 Mϕ were allowed to adhere to 12- to 15-mm coverslips (catalog no. TCP017-1X200NO; Himedia, India). Macrophages were infected with L. donovani for 12 h. As per the experimental layout, cells were treated with rapamycin and RA postinfection. Later, the slides were stained with 50 μg/mL filipin III (6 (link), 25 (link)). Thereafter, the excess dye was removed by washing with 1× phosphate-buffered saline (PBS). Coverslips were mounted in glycerol mounting medium with an antifading agent (catalog no. P10144; Thermo Fisher Scientific, USA).
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5

Confocal Imaging of Tissue Samples

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At two sites, 4 mm punches (biopsy puncher, Miltex 33-34) were taken from the whole insert and mounted on cytoslides (Shandon, ThermoFisher 5991057) on ProLong Gold antifade mounting medium (ThermoFisher, P10144). Images were acquired on a Leica SP8 confocal microscope with a 63x oil objective at the BICU imaging unit of Umeå University. Representative sites were imaged as z-stacks of 40 slices with 0.5 μm step size and converted by maximum intensity projection using Fiji (Schindelin et al., 2012 (link)).
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6

Microscopic Evaluation of Nerve Scaffold Constructs

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The two obtained kinds of ANXs (CD NG, CD + scCO2 NG) were embedded in OCT embedding glue (SAKURA, Japan), and then frozen sections with a thickness of 6 μm were made using a freezing microtome (CM1900, Leica, USA) on the cross-section of the nerve. At the same time, natural porcine sciatic nerve (Natural SN) was selected as a control. After putting in PBS and degumming, hematoxylin and eosin (H&E) staining was performed according to the kit instructions (G1120, Solarbio, China). The tissue on the section was blocked in 10% goat serum (SL038, Solarbio, China) for 30 min. Laminin antibody (1:1000, L8271, Sigma–Aldrich, USA) from mice was used as the primary antibody to cover the nerve tissue and incubated overnight in the dark at 4 °C. The excess primary antibody was washed off with PBS and then incubated for 2 h with goat anti-mouse IgG H&L secondary antibody (Alexa Fluor 594, 1:200, ab150116, Abcam, USA) in the dark at 37 °C. The excess secondary antibody was washed off with PBS, and sections were incubated with DAPI (1:100, 62248, Thermo Fisher Scientific, USA) staining solution for 5 min in the dark, washed with PBS and mounted with aqueous mount (P10144, Thermo Fisher Scientific, USA). Finally, a microscope equipped with a DP71 camera (BX51, Olympus, Japan) was used to image the stained sections obtained in the above experiment.
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