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Protease inhibitor cocktail 100

Manufactured by Thermo Fisher Scientific
Sourced in United States, China

The Protease Inhibitor Cocktail (100x) is a concentrated solution designed to inhibit a broad spectrum of serine, cysteine, and metalloproteases. It is intended for use in protein extraction and purification procedures to prevent proteolytic degradation of target proteins.

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4 protocols using protease inhibitor cocktail 100

1

Molecular Signaling Pathway Profiling

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KR-12 (KRIVQRIKDFLR) was synthesized and purified by GL Biochemistry (Shanghai). Alizarin Red dye solution was purchased from Servicebio (Wuhan, China). Phosphatase (ALP) Color Development Kit, ALP Quantitative Kit, RIPA lysis buffer, and phenylmethylsulfonyl fluoride (PMSF; 100×) were purchased from Beyotime Biotechnology (Nantong, China). TRIzol reagent was purchased from Invitrogen (Carlsbad, CA, USA). The SYBR Premix EX Taq Real-time PCR kit and cDNA Synthesis Kit were purchased from TaKaRa (Japan). Protease inhibitor cocktail (100×) and the BCA Protein Assay Kit were purchased from Thermo Fisher (USA). Polyvinylidene fluoride membrane for western blotting and Immobilon western Chemiluminescent HRP Substrate (ECL) were purchased from Millipore (USA). Monoclonal antibodies against SMAD1 (D59D7), SMAD5 (D4G2), SMAD4 (D3M6U), P-SMAD1/5 (41D10), GAPDH (D16H11), and horseradish peroxidase-linked anti-IgG secondary antibodies were purchased from Cell Signaling Technology (USA). TGF-β/SMAD inhibitor (LDN-193189 HCL) was purchased from Selleck Chemicals (Houston, TX, USA). Lipofectamine™ 3000 and Lipofectamine™ RNAiMAX transfection reagent were purchased from Invitrogen (Carlsbad, CA, USA). Gaussia luciferase reporter plasmids and Secrete-Pair Assay Kit were purchased from Genecopoeia (Rockville, MD, USA).
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2

Crosslinking and Chromatin Shearing for ChIRP Analysis

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Five millions of HEK293 cells were crosslinked in 1% methanol free formaldehyde (Thermo Fisher Scientific) for 10 min and then quenched with 0.125 mM glycine for 5 min. Samples were then lysed using the ChIRP lysis buffer (50 mM Tris–HCl pH 7.0, 10 mM EDTA, 1% SDS) supplemented with protease inhibitor cocktail 100× (Thermo Fisher Scientific) and Ribolock RNase inhibitor (Thermo Fisher Scientific). Samples were then sonicated using the Covaris M220 ultrasonicator and 25 μg of sheared chromatin was treated with 200 μg of proteinase K for 45 min at 50°C. DNA was then extracted using GeneJET Gel Extraction kit (Thermo Fisher Scientific) and quantified by the nanodrop 2000. 600 ng of the subsequent DNA were loaded on agarose gel 1.2% to verify the shearing efficiency (Supplementary Figure S1B). The sheared chromatin was then flash frozen in liquid nitrogen and stored at –80°C for later use.
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3

Western Blot Analysis of Caco2 Cells

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The transfected control Caco2 cells were lysed in RIPA buffer (150 mM NaCl; 50 mM Tris-Cl, pH 8; 1% NP-40; 0.5% deoxycholate; 0.1% SDS) (Beyotime, Shanghai, China) with Protease Inhibitor Cocktail (100×) (Thermo Scientific, MA, USA). The resulting samples were separated using 10% SDS-PAGE (Invitrogen, Carlsbad, CA, USA) and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking for 1 h in 5% non-fat milk in TBST at 25°C, the membranes were incubated overnight at 4 °C with specific primary antibodies, including SMARCE1 (Abcam, Cambridge, UK, 1:1000), tfec (Santa Cruz, USA,1:500), and β-tubulin (Sigma, USA, 1:10,000). Primary antibody binding was visualized using horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse IgG (Sigma, USA, 1:10,000) for 1 h at 25°C. Signal intensities were measured using a Chemiluminescent HRP substrate (Yamei, Shanghai, China) and imaged using ImageJ v1.8.0 (NIH, Bethesda, MD, USA).
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4

Protein extraction and western blot analysis

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Cells and tissues were homogenized in RIPA buffer (Thermo Fisher Scientific) with a protease inhibitor cocktail (100×) (Thermo Fisher Scientific) as previously described.10 (link) The proteins were electrophoresed in 8%, 10%, or 12% SDS-PAGE. The separated proteins were transferred to PVDF membranes (Merck Millipore Ltd., Burlington, MA, USA), blocked in 5% BSA (Solarbio) for 1 hour and probed with the appropriate antibodies (Table 3). Images were taken with a gel imaging system (Aplegen, Gel Company, Inc, San Francisco, CA, USA). The protein bands were recorded and analyzed with Lab Works. The protein signal intensity was normalized to that of GAPDH.
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