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Sc 13160

Manufactured by Santa Cruz Biotechnology
Sourced in United Kingdom, United States

Sc-13160 is a laboratory instrument designed for molecular biology and biochemistry applications. It is a high-performance centrifuge capable of separating and concentrating biological samples, such as cells, organelles, or macromolecules, based on their size, density, and sedimentation rate. The core function of this product is to provide reliable and efficient sample separation and preparation for downstream analysis and experimentation.

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6 protocols using sc 13160

1

Antibody Characterization for Western Blot

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The antibodies used for Western blot analysis in the present study were as follows: rabbit monoclonal anti-phospho-extracellular signal-regulated kinase (ERK)1/2 antibody (1:1,500, MAB1018, R&D Systems, Minneapolis, MA, United States), mouse monoclonal anti-phospho-p65 subunit of nuclear factor-kappa B (NF-κB) antibody (1:500, sc-136548, Santa Cruz Biotechnology Inc., Santa Cruz, CA, United States), rabbit polyclonal anti-phospho vascular endothelial growth factor receptor (VEGFR-2) antibody (1:1,000, ab194806, Abcam, Cambridge, United Kingdom), mouse monoclonal anti-intercellular adhesion molecule-1 (ICAM-1) antibody (1:1,000, sc-8439, Santa Cruz Biotechnology Inc.), mouse monoclonal anti-vascular cell adhesion protein-1 (VCAM-1) antibody (1:1,000, sc-13160, Santa Cruz Biotechnology Inc.), mouse monoclonal anti-VEGF antibody (1:1,500, MAB293, R&D Systems), rabbit polyclonal caspase-3 antibody (1:1,000, sc-7148, Santa Cruz Biotechnology Inc.), rabbit polyclonal ADAM-17 antibody (1:1,000, ab39163, Abcam), and rabbit monoclonal anti-TIMP-3 antibody (1:1,000, ab277794, Abcam). The recombinant proteins used in the present study were as follows: human TIMP-3 (Cat No 973-TM-010, R&D Systems), human tumor necrosis factor-alpha (TNF-α) (Cat No 210-TA, R&D Systems), and human VEGF (Cat No 293-VE-050, R&D Systems).
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2

Western Blot Analysis of VAP-1, ICAM-1, and VCAM-1

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Retinas and cells were homogenized in a western lysis buffer (30 mM Tris-HCl; pH 7.5, 5 mM EDTA, 1% Triton X-100, 250 mM sucrose, 1 mM sodium vanadate and protease inhibitor cocktail), the lysates were then centrifuged at 14,000 ×g for 15 min at 4 °C, and the supernatant was used for protein estimation and further analysis. Equal amounts of protein were subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) in 8%–10% gels and transferred onto nitrocellulose membranes (Bio-Rad Laboratories). To determine the presence of VAP-1 in the vitreous samples, equal volumes (15 μl) of vitreous samples were boiled in Laemmli’s sample buffer (1:1, v/v) under reducing conditions for 10 min and analyzed as described (6,10,11). Immunodetection was performed with the use of the anti-VAP-1 antibody (1:1000, ab196739, Abcam), anti-ICAM-1 antibody (1:500; sc 8439, Santa Cruz, Biotechnology Inc.), and anti-vascular cell adhesion molecule-1 (VCAM-1) antibody (1:500, sc 13,160, Santa Cruz, Biotechnology Inc.). Membranes were stripped and re-probed with an antibody against β-actin to evaluate sample processing and lane loading. Bands were visualized using a high-performance chemiluminescence machine (G: Box Chemi-XX8 from Syngene, Synoptic Ltd. Cambridge, UK), and the intensities were quantified using the GeneTools software (Syngene by Synoptic Ltd.).
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3

Multimodal Characterization of DDR1 Signaling

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Primary antibodies against pDDR1-Y792(11994S; CST; 1:1000), DDR1 (10536-1-AP; Proteintech; 1:1000), YAP1 (13584-1-AP; Proteintech; 1:1000), pYAP1-S127 (AP0489; ABclonal; 1:1000), YWHAE (11648-2-AP; Proteintech; 1:1000) VE-cadherin (bs-4310R; Bioss; 1:1000) and GAPDH (BE0024; Easybio; 1:4000) were used for Western blotting. Rhodamine Phalloidin (RM02835; ABclonal; 1:200), Primary antibodies against YAP1 (66900-1-Ig; Proteintech; 1:200), DDR1 (10536-1-AP; Proteintech; 1:200), VE-Cadherin (sc-9989; Santa Cruz; 1:100), E-selectin (MA1-22165; Invitrogen; 1:200), ICAM1 (sc-7891; Santa Cruz; 1:100), VCAM1 (sc-13160; Santa Cruz; 1:100), Caveolin-1 (66067-1-Ig; Proteintech; 1:200), Rab 5A (sc-166600; Santa Cruz; 1:100), PE-conjugated CD63 (BC-353003; BaiCheng Technology; 1:200) and LATS1 (3477S; CST; 1:200) were used for immunofluorescence staining. DDR1 antibody (200 μg/ml; sc-390268; Santa Cruz) were used for bead pulling/magnetic tweezer system. The validation of all primary antibodies for the species and application were described on the manufacturer’s website.
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4

Immunofluorescence Staining of Cells

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Cells were seeded on glass slide and cultured in corresponding media until achieved 80% confluency. After washing with PBS, cells or frozen sections were fixed with 4% paraformaldehyde (PFA) (Sigma-Aldrich) for 15 minutes and then permeabilized with 0.1% Triton X-100 (Sigma-Aldrich) for another 15 minutes. Samples were blocked with 5% appropriate serum/1 × PBS at 37 °C for 30 minutes followed by incubation with primary antibodies at 37 °C for 1 hour: CD34 (sc7324, Santa Cruz, 1:50); CD31 (sc1506, Santa Cruz, 1:50); eNOS (610297, BD Biosciences, 1:50); CD144 (sc6458, Santa Cruz, 1:50); KDR (ab9530, Abcam, 1:100); human specific CD31 (ab32457, Abcam, 1:100); HES5 (Ab5708, Millipore, 1:50); vWF (ab6994, Abcam, 1:100); VCAM-1 (sc-13160, Santa Cruz, 1:50); ICAM-1 (MA5-13021, ThermoFisher, 1:50). After washing with PBS, samples were incubated with the appropriate Alexa Fluor-conjugated secondary antibodies (Invitrogen, 1:500) for 45 minutes at 37 °C. Samples were washed with PBS and then DAPI (Sigma Aldrich) was applied for 3 minutes. The slides were mounted with Fluorescent Mounting Media (Dako) and images were acquired by Olympus IX81 microscope equipped with TRITC, FITC and DAPI filters.
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5

Immunofluorescence Analysis of Tight Junction Proteins in Spinal Cords

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Adhesion and tight junction molecule expression assessments were performed as previously described7 (link) (Figs. 1A and 3E–T). Immunofluorescence was performed on spinal cords of HIIT Pre-EAE, SED Pre- EAE mice (n = 5/group) and naïve controls (n = 3) for VCAM-1 (monoclonal anti-mouse VCAM-1, sc-13160, 1:800, Santa cruz), ICAM-1 (monoclonal anti-mouse ICAM-1, sc-107, 1:200, Santa cruz), occludin (monoclonal anti-mouse occludin, sc-133256, 1:600, Santa cruz) and claudin-4 (monoclonal anti-mouse claudin-4, sc-376643, 1:800, Santa cruz). To identify blood vessels, sections were double stained with CD31 (rat anti-mouse CD31, 550274, 1:800, BD-Pharmingen) and nuclear counterstain was performed using DAPI. Ten microscopic field images (X40 magnification) of three sections in each spinal cord at 60 μm apart were captured as described above. Stained areas around blood vessels in each image were marked. Group average MFI ± SEM was calculated and reported as ratio to stained area in spinal cords of naïve mice. Measurements were performed by using the Image J software analysis (ver. 1.51H, NIH, USA).
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6

Quantifying Endothelial Cell Adhesion Molecules

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HUVEC were probed with mouse anti-human ICAM-1 (SC-8439, Santa Cruz, CA, USA), VCAM-1 (SC-13160, Santa Cruz, CA, USA), or E-selectin (SC-14011, Santa Cruz, CA, USA), antibodies at dilution (1:1000), in 1% BSA, in 2 h room temperature, after the cells were fixed by 1% paraformaldehyde. The cells were then incubated with the horseradish peroxidase-conjugated secondary antibody. Finally, a peroxidase substrate solution was added and measured at the 490 nm absorbance by a microplate reader (BioRad 3550, Hercules, CA, USA).
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