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In fusion hd cloning kit

Manufactured by Addgene

The In-Fusion HD Cloning Kit is a DNA cloning system that enables the seamless assembly of multiple DNA fragments, regardless of their source or size. It provides a reliable and efficient method for combining DNA sequences without the need for restriction enzymes or ligase.

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4 protocols using in fusion hd cloning kit

1

Generating UAS-ap and UAS>stop>ap RNAi Constructs

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Full-length ap cDNA was synthesized by RT-PCR with adult fly head RNA and 2 primers, 5′-GCGGCCGCCAAAATGGGCGTCTGCACCGAGGAGCGC-3′ and 5′-TCTAGATTAGTCCAAGTTAAGTGGCGGTGTGC-3′. The PCR product was digested with NotI and XbaI, and cloned into a pBluescript (pBS) II SK(+). The ap cDNA was subcloned into the NotI/XbaI-digested pUAST attB vector [65 (link)]. Constructs of UAS-ap were injected into eggs of PBac{y[+]-attP-9A VK00005 (BL24862).
For the generation of the UAS-FRT-stop-FRT-ap RNAi construct (UAS>stop>ap RNAi), an ap RANi fragment was obtained by PCR from the genomic DNA of UAS-ap RNAi (NIG-fly, 8376R-1). Subsequently, it was inserted into the pUAST attB vector using an In-Fusion HD Cloning Kit (Takara Bio, Japan). The primer sequences used for the PCR are as follows: forward, 5′-AACAGATCTGCGGCCGCATAACGCGCAACCTCGAC-3′; reverse, 5′-ACAAAGATCCTCTAGAGGAACAATGCTCCGACTAG-3′. Next, the FRT-stop-FRT cassette (mCD8::GFP vector (Addgene, 24385) and then cloned into the pUAST attB vector containing the ap RNAi fragment by using an In-Fusion HD Cloning Kit. The primer sequences used for the PCR are as follows: forward, 5′-AGGGAATTGGGAATTCGAAGTTCCTATTCCGAAG-3′; reverse, 5′-ATCTGTTAACGAATTCGAAGTTCCTATACTTTCTAG-3′. The UAS>stop>ap RNAi construct was also injected into eggs of PBac{y[+]-attP-9A}VK00005.
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2

Optimized Split-GFP System Cloning

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The backbone vector used for Split-GFP system is Plenti from Addgene (#80347, a gift from Erik Rodriguez & Roger Tsien34 (link)). The sequences for GFP10 is GGCATGGATTTACCAGACGACCATTACCTGTCAACACAAACTATCCTTTCGAAAGATCTCAAC, and GFP11 is GAAAAGCGTGACCACATGGTCCTTCTTGAGTATGTAACTGCTGCTGGGATTACAGATGCTAGC. The sequences for “GFP11-linker-Myc tag-XbaI:SgsI-linker-GFP11-T2A-GFP10-linker-Pfl23II:SfaAI-Flag tag-linker-GFP10″ were synthesized form Integrated DNA Technologies (IDT) directly. This fragment was inserted into Plenti by BamHI:EcoRI. The CDS of TEAD1 were inserted by XbaI:SgsI using In-Fusion HD Cloning Kit (Takara Bio, #638946). The CDS of TAZ, SMAD4, VGLL4, and MENIN were inserted by Pfl23II:SfaAI. The fragment, EF1a-mCherry-P2A, which was subcloned from an Addgene plasmid (#135003, a gift from Prashant Mali35 (link)), was ligated with GFP1–9 by overlap PCR first and then inserted into Plenti by XhoI:Acc65I using In-Fusion HD Cloning Kit.
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3

Optimized Split-GFP System Cloning

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The backbone vector used for Split-GFP system is Plenti from Addgene (#80347, a gift from Erik Rodriguez & Roger Tsien34 (link)). The sequences for GFP10 is GGCATGGATTTACCAGACGACCATTACCTGTCAACACAAACTATCCTTTCGAAAGATCTCAAC, and GFP11 is GAAAAGCGTGACCACATGGTCCTTCTTGAGTATGTAACTGCTGCTGGGATTACAGATGCTAGC. The sequences for “GFP11-linker-Myc tag-XbaI:SgsI-linker-GFP11-T2A-GFP10-linker-Pfl23II:SfaAI-Flag tag-linker-GFP10″ were synthesized form Integrated DNA Technologies (IDT) directly. This fragment was inserted into Plenti by BamHI:EcoRI. The CDS of TEAD1 were inserted by XbaI:SgsI using In-Fusion HD Cloning Kit (Takara Bio, #638946). The CDS of TAZ, SMAD4, VGLL4, and MENIN were inserted by Pfl23II:SfaAI. The fragment, EF1a-mCherry-P2A, which was subcloned from an Addgene plasmid (#135003, a gift from Prashant Mali35 (link)), was ligated with GFP1–9 by overlap PCR first and then inserted into Plenti by XhoI:Acc65I using In-Fusion HD Cloning Kit.
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4

CREB1 Perturbation via CRISPR and Overexpression

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Lentivirus packaging plasmids including PSRV-REV, PMD.2G and PMDGp-lg/p-RRE were gifts from Biomedicine department in Aarhus University, Denmark. The pMAX-GFP (VDF-1012) plasmid was supplied by the Amaxa nucleofection kit (#VPI-1003, Lonza) and used as a fluorescence control plasmid during transfection.
Two sgRNAs targeting the upstream and downstream sequences of CREB1 exon 1 (including TATA box area) were designed by the online software tool CRISPOR (http://crispor.tefor.net). Accordingly, two pairs of oligos (SS1: CACCGCACCTCTCCTTGTTAGTAG, AS1: AAACCTACTAACAAGGAGAGGTGC; SS2: AAACCTACTAACAAGGAGAGGTGC, AS2: AAACTATCTGAGAGCACCATTTAC) were annealed and ligated into lentiCRISPRv2 vector (Addgene plasmid #52961) at BamHI site according to the optimized golden gate assembly protocol [69 (link)]. The resulting plasmids were named as lenti CREB1SgRNA1 and lenti CREB1SgRNA2.
CREB1 cDNA was cloned into lentiCRISPRv2 via XbaI and BamHI sites, by which the Cas9 cDNA was replaced. Thereafter, hygromycin-resistance gene driven by EF1 promoter from PB-TRE-dCas9-VPR plasmid (Addgene plasmid #63800) was further introduced into the above plasmid using In-Fusion HD Cloning Kit. The resulting plasmid is named as lentiCREB1hygro.
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