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Whole genome 2.7m array

Manufactured by Thermo Fisher Scientific

The Whole-Genome 2.7M Array is a high-density single nucleotide polymorphism (SNP) genotyping array designed for whole-genome analysis. The array features approximately 2.7 million genetic markers, providing comprehensive genome coverage for human genetic studies.

Automatically generated - may contain errors

2 protocols using whole genome 2.7m array

1

Multidisciplinary Diagnostic Assessments for PDD

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All patients underwent multidisciplinary developmental assessments prior to a diagnosis of a pervasive developmental disorder being established according to DSM-IV-TR criteria. Multidisciplinary assessment consisted of physical therapy, occupational therapy and/or speech pathologist assessment, in addition to assessment by a pediatrician. Need for therapist assessment was initially ascertained through a nurse-led phone-based intake interview of patients, and subsequently based on the recommendations of the pediatrician. Diagnostic formulation for all patients was made after multidisciplinary assessments, and following discussion of each patient in a multidisciplinary meeting.
CMA testing was performed using the Affymetrix Whole-Genome 2.7M Array, and breakpoints were reported using NCBI36/hg18 coordinates. Only clinically reported variants were evaluated in this study. Karyotype was performed using a standard 550 bands per haploid set Giemsa-banded method. Size of the FMR1 repeat expansion was assessed using the PCR method, and confirmed using Southern blot in affected individuals.
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2

Copy Number Alteration Analysis in BM

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DNA material of BM at diagnosis was available from 131/135 patients for Copy Number Alteration (CNA) analysis using Multiplex Ligation-dependent Probe Amplification (MLPA)25 (link) or the Affymetrix Cytogenetics Whole Genome 2.7M Array or Cytoscan-HD (Affymetrix, Santa Clara, CA) according to the manufacturer's protocol.
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