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12 protocols using anti g6pd

1

Oxidative Stress Protein Profiling

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Collected cells were homogenized in lysis buffer (5% SDS, 10 mM EDTA, 50 mM NaCl, 10 mM Tris–HCl). Protein concentrations were determined using pierce BCA protein assay (Thermo Fisher, Rockford, IL, USA). Proteins were resolved using SDS-polyacrylamide gel electrophoresis and transferred onto nitrocellulose membrane. Membranes were blocked in 5% milk, incubated with primary antibody at a concentration of 1:1000, then incubated with secondary antibody at a concentration of 1:10,000 and read using ECL regent (Bio-Rad, Richmond, CA, USA). Antibodies anti-GCLM, anti-GSS, anti-GCLC, anti-GSR, anti-GPX1, anti-SOD1, anti-SOD2, anti-TKT, anti-G6PD, anti-CGL and anti-Actin were purchased from Abcam. Anti-NRF2 and anti-CBS antibody was purchased from Cell Signaling Technology.
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2

Plk1 Regulation of Pentose Phosphate Pathway

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Antibodies and reagents used in the study are listed as following: anti-Plk1 (Sigma-Aldrich, P5998, 1:10,000), anti-Flag (Sigma, F3165, 1:5000), anti-HA (Sigma, H9658, 1:5000), anti-G6PD (Protein-tech, 25413-1-AP, 1:1000), anti-G6PD (Abcam, ab993, 1:1000), anti-glutathione S-transferase (anti-GST; Protein-tech, 10000-0-AP, 1:5000), anti-phospho-H3Ser10 (Millipore, 06-570, 1:1000), anti-cyclin B1 (Protein-tech, 55004-1-AP, 1:1000), anti-phospho-threonine (Millipore, AB1607, 1:1000), anti-PGLS (Santa Cruz, SC-398833, 1:1000), anti-6PGD (Protein-tech, 14718-1-AP, 1:1000), anti-CDK2 (Protein-tech, 10122-1-AP, 1:1000), rabbit IgG (Protein-tech), mouse IgG (Santa Cruz), and anti-Actin (Protein-tech, 60008-1-Ig, 1:5000). NADP+, NADPH, GSH, G6P, 6PG, NAC, Dox, tetracycline, HU, propidium iodide, nocodazole, 4,6-diamidino-2-phenylindole (DAPI), casein, D2O, ribonucleosides, and deoxyribonucleosides were purchased from Sigma-Aldrich; R5P, nucleotides (AXP, GXP, CXP, and UXP, X = M, D, and T) were purchased from Sangon Biotech. BI2536 was purchased from Selleck Corporation, PP2A was from Millipore, and human recombinant Plk1 was from Sino biological company. [2-13C]-glucose and [U-13C]-glucose were from Cambridge Isotope Laboratories. γ-32P ATP was from China Isotope & Radiation Corporation.
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3

Immunohistochemical Analysis of Metabolic Proteins

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Four-micron-thick paraffin-embedded sections were collected and stained for H&E and were incubated overnight with the following antibodies: anti-c-Myc (Abcam, Cambridge, United Kingdom; ab32072), anti-KI-67 (Abcam, ab15580), anti-G6PD (Abcam, ab87230), anti-GLUL (Sigma-Aldrich G2781), anti-GLS (Abcam, ab 262716), and anti-CASP3 (Cell Signaling Technology, Danvers, MA; 9664L), and anti-CDKN1A (Abcam, ab107099). The secondary antibodies anti-rabbit Dako EnVision+ System Labelled Polymer-HRP (Dako, Carpinteria, CA) or goat anti-rabbit Biotinylated IgG Antibody (H+L) (Vector Laboratories, Newark, CA; BA-1000) were used. Peroxidase binding sites were detected by Vector NovaRED Peroxidase (HRP) Substrate Kit (Vector Laboratories).
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4

Western Blot Analysis of Antioxidant and EMT Markers

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Cells were lysed with lysis buffer (P89901; Thermo Scientific) containing protease inhibitors (P8340; Sigma-Aldrich). Western blot analysis was performed as previously described 10 (link). The following primary antibodies were used: anti-Trx-1 (1: 1000), anti-G6PD (1:2000), and GAPDH (1:5000) from Abcam (Cambridge, UK); anti-E-cadherin (1:1000; Cell Signaling Technology, Beverly, MA), and anti-vimentin (1:5000; Santa Cruz, CA, USA). Protein band intensity was quantified using Image Lab Software (Bio-Rad Laboratories Inc., Berkeley, CA, USA).
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5

Detecting Metabolic Regulators via Western Blot

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Whole‐cell extracts were obtained using RIPA buffer composed of 50 mM Tris–HCl (pH 7.5), 15 mM NaCl, 1% NP‐40, 0.5% deoxycholate, 0.1% sodium dodecyl sulfate and protease inhibitors. In the Western blotting analysis, 30 μg of total protein was loaded onto a 12.5% sodium dodecyl sulfate‐polyacrylamide gel and then transferred to a nitrocellulose membrane. The membrane was blocked at 4°C overnight in TBS containing 5% Phospho Blocker Blocking Reagent and 0.2% Tween‐20 and then incubated at 4°C overnight with the following primary antibodies (Abs): anti‐IDH2 (1:500 dilution), anti‐Hif‐1α (1:200 dilution, Santa Cruz Biotechnologies, Dallas, TX, USA), anti‐PHD2 (1:500 dilution, Invitrogen, Waltham, MA, USA), anti‐GLUT1 (1:200 dilution), anti‐TIGAR (1:1,000 dilution), anti‐anti‐TKT (1:2,500 dilution), anti‐CTPS1 (1:1,000 dilution), anti‐PKM2 (1:1,000 dilution), anti‐LDHA (1:2,000 dilution), anti‐IDH1 (1:500 dilution; Abcam, Tokyo, Japan), anti‐ME1 (1:500 dilution), and anti‐G6PD (1:100 dilution). The blots were incubated with a peroxidase‐labeled secondary Ab for 1 h. After PBS washing, the signals were detected using enhanced chemiluminescence reagents with the ECL plus Western Blotting Detection System and analyzed using the LAS 3000 system (GE Healthcare, Los Angeles, CA, USA).
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6

Immunohistochemical Expression of Liver Proteins

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Each group of HCC samples was fixed in 10% formalin, embedded in paraffin, and processed as 5 μm continuous sections. Samples were dewaxed with discontinuous concentrations of ethanol and blocked to inhibit endogenous peroxidase. They were then heated in a microwave to retrieve antigens, cooled to room temperature, and then blocked by incubation in goat serum for 30 min at 37°C. Samples were incubated in rabbit anti-ANLN, anti-ENTPD2, anti-TRIP13, anti-PLAC8, anti-G6PD and anti-ADH1C (Abcam, Cambridge, UK; 1:1,200) overnight at 4°C, followed by incubation with horseradish peroxidase-coupled goat anti-rabbit secondary antibody at 37°C for 30 min and stained using 3,3′-diaminobenzidine. The cell nucleus was stained blue by hematoxylin. Sections were then dehydrated, cleared by xylene, and mounted. ANLN, ENTPD2, TRIP13, PLAC8, G6PD, and ADH1C expression were detected by IHC using a streptavidin peroxidase method. ANLN, ENTPD2, TRIP13, PLAC8, G6PD, and ADH1C expression in the liver were used as a positive control. Samples incubated with PBS instead of the ANLN, ENTPD2, TRIP13, PLAC8, G6PD, and ADH1C primary antibody were used as a negative control. Positive and negative controls were included for each batch of immunohistochemically stained sections. The experimental procedure was performed according to strict adherence to the manufacturers' instructions.
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7

Antibody Characterization for Oxidative Stress Proteins

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Unless otherwise stated, all chemicals were from Sigma-Aldrich Co., Ltd. Anti-Nrf2 (H300; sc-13032), Anti-Ub (sc-8017), anti-MKP-1 (sc-1102) were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antiserum against aldoketo reductases 1C1 and C2 (AKR1C) was kindly provided by Professor John Hayes (University of Dundee, Dundee, UK). Anti-IDH1 (Cat#: 3997) were from Cell Signaling Technology (Danvers, MA, USA). Anti-TKT (Cat#: ab88438), anti-ME1 (Cat#: ab87974), and anti-G6PD (Cat#: ab993) were from Abcam (Cambridge, United Kingdom). Actin antibody (Cat#: R1207) and IgG antibody (Cat#: HA1011) were purchased from Hua-an (Hangzhou, Zhejiang, China). Antibodies against NQO1, HO-1 or AKR1B10 were raised in this laboratory and described previously [37 (link), 38 (link)].
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8

Western Blot Analysis of Protein Expression

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Equal amounts of extracts (20 μg) were separated by 10% SDS‒PAGE and transferred to PVDF membranes. After blocking with 5% milk in TBST, the following specific primary antibodies were used: anti-G6PD (1:1000; Abcam, UK), anti-VDAC1 (1:1000; Abcam), anti-Bax (1:2000; Abways, China), anti-Bcl-2 (1:500; Abways), anti-SM22α (1:2000; Abcam), anti-PCNA (1:1000; Abcam), anti-VDAC2 (1:1000; Abcam), anti-VDAC3 (1:500; Wanlei bio, China), anti-β-actin (1:1000; PTM bio, China), anti-α-actin (1:1000; PTM bio), anti-GAPDH (1:1000; Proteintech, China), anti-Tom40 (1:1000; Proteintech), anti-Caspase 9 (1:1000; PTM bio), anti-Cleaved Caspase 9 (1:1000; Wanlei bio), anti-Caspase 7 (1:1000; PTM bio), anti-cleaved Caspase 7 (1:1000; Wanlei bio), anti-Caspase 3/Cleaved Caspase 3 (1:1000; Wanlei bio), and anti-PARP/Cleaved PARP (1:1000; Wanlei bio), and incubated at 4 °C overnight. The blots were visualized using a GE ImageQuant™ LAS 4000 detection system (USA). Band intensities were quantified with ImageJ software (USA).
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9

Comprehensive Glycolysis Pathway Analysis

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A Cell Counting Kit-8 (CCK-8, Cat# CK04) was purchased from Dojindo (Kumamoto, Japan). Pooled antisense oligonucleotides (i.e., siRNAs) against human OVOL2, P65, and GLUT1 were purchased from GenePharma (Shanghai, China). Antibodies against OVOL2 (Cat# ab101580) and P65 (Cat# ab16502) were purchased from Abcam (Cambridge, MA, USA). The following antibodies were used: Glycolysis Antibody Sampler Kits (Cell Signaling Technology; Cat# 12866 and Cat# 8337), anti-GLUT1, anti-GLUT2, anti-GLUT3, anti-GLUT4, anti-PGK1, anti-GCK, anti-PDP2, anti-DLD, anti-PCK1, anti-SDHA, anti-G6PD (all from Abcam; Cat# ab115730, ab234440, ab191071, ab188317, ab38007, ab184169, ab99170, ab133551, ab28455, ab14715, and ab210702, respectively), anti-GAPDH anti-Lamin B, anti-actin and anti-Calnexin (all from Cell Signaling Technology; Cat# 8884, 13435, 3700 and 2433, respectively).
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10

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cells using RIPA lysis buffer (Millipore, USA). Proteins were separated by SDS-PAGE, transferred to a nitrocellulose membrane, and incubated with speci c primary antibodies. Then, the membrane was incubated with Alex 680-or IR 800-conjugated secondary antibody for Odyssey CLx analysis (Li-COR, USA).
Antibodies used in this study were as follows: anti-TIGAR (sc-166290, Santa Cruz), anti-p53 (sc-126, Santa Cruz), anti-JMJD5 (ab36104, Abcam; sc-377440, Santa Cruz), anti-HK2 (sc-374091, Santa Cruz), anti-Glut1 (sc-377228, Santa Cruz), anti-PKM2 (#4053, CST), anti-G6PD (ab993, Abcam), and anti-Actin (sc-8432, Santa Cruz).
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